CX300207

Overview
NameCX300207
Unique NameCX300207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9464 contig Ccv1_Contig9464:570..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: MENB_HAEIN (Naphthoate synthase OS=Haemophilus influenzae GN=menB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.652e-12
Identity = 45/142 (31.69%), Postives = 70/142 (49.30%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKYT 430
            + CDL I  E A+ G     +    G  G   + RLVG+  A++I F  R+ + ++A+ +GLVN  VP    + + +   +E+ +  PIAIR  K A+    +   A   EL     +    TE+  EG  AF EKR P ++
Sbjct:  139 MLCDLTIAAENAIFGQTGPKVGSFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGLVNTVVPYADLEKETVRWCREMLRNSPIAIRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNEKRAPDFS 279          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_SERP5 (Fatty acid oxidation complex subunit alpha OS=Serratia proteamaculans (strain 568) GN=fadB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.157e-12
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQE 250
            LA D R+    A +GLPET L I+PG GG+ RLPRL+G   A +II  G+ VS KDA+ +GLV+  V   +    AL++ Q+
Sbjct:  122 LATDFRVASPDARIGLPETKLGIMPGFGGSVRLPRLLGNDSALEIIAAGKDVSAKDALKVGLVDAVVAPEKLVEAALKMLQQ 203          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: MENB_PASMU (Naphthoate synthase OS=Pasteurella multocida GN=menB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.818e-12
Identity = 43/142 (30.28%), Postives = 70/142 (49.30%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKYT 430
            + CDL I  + A+ G     +    G  G   + R+VG+  A++I F  R+   K+A+ +GLVN  VP  + + + +   +E+ +  PIA+R  K A+    +   A   EL     +    TE+  EG  AF EKR P ++
Sbjct:  139 MICDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKEALEMGLVNTVVPYAELEKETVRWCREMLRNSPIALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNEKRAPDFS 279          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECHP_RAT (Peroxisomal bifunctional enzyme OS=Rattus norvegicus GN=Ehhadh PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.818e-12
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVD--MASALELEEECYIGTLHTEDRLEGLAA 400
            AL C  RI    A +GLPE  L I+PGA GTQ LPR+VG  VA D+I +G+ +S  +A+ LG+++  V +   + +A++ AQ+I  K     R+  + +     +D   A A+    + Y G L  E  +  + A
Sbjct:  105 ALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVE-EAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQA 238          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECHD3_HUMAN (Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Homo sapiens GN=ECHDC3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.806e-12
Identity = 38/141 (26.95%), Postives = 70/141 (49.65%), Query Frame = 2
Query:    8 ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKYT 430
            +CD+ +  + +    P   + +     G   L R V + VA +++FTG  +S ++A+  GL++  VP  + Q + + IA++I       + + K    K L  D+ +A  L  +  +  L   D  EG+ AF +KRKP ++
Sbjct:  160 SCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWS 299          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: MENB_ECOLI (Naphthoate synthase OS=Escherichia coli (strain K12) GN=menB PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12
Identity = 42/142 (29.58%), Postives = 69/142 (48.59%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKYT 430
            + CDL I  + A+ G     +    G  G   + R+VG+  A++I F  R+   K A+ +GLVN  VP    + + +   +E+ Q  P+A+R  K A+    +   A   EL     +    TE+  EG  AF +KR+P ++
Sbjct:  139 MMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFS 279          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: MENB_ECOL6 (Naphthoate synthase OS=Escherichia coli O6 GN=menB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12
Identity = 42/142 (29.58%), Postives = 69/142 (48.59%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKYT 430
            + CDL I  + A+ G     +    G  G   + R+VG+  A++I F  R+   K A+ +GLVN  VP    + + +   +E+ Q  P+A+R  K A+    +   A   EL     +    TE+  EG  AF +KR+P ++
Sbjct:  139 MMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFS 279          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_IDILO (Fatty acid oxidation complex subunit alpha OS=Idiomarina loihiensis GN=fadJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    2 ALACDLRICGEAA--LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLE 313
            A+AC +R+C + +   LGLPE  L ++PG+GGTQRLP LVG      +I TG+++  K A+  GLV   VP  Q+ L  + +   + +K P + +   + I+K LE
Sbjct:  120 AMACHVRVCTDNSKTALGLPEVKLGLLPGSGGTQRLPELVGVQQGLTMILTGKELRAKQALKAGLVTEVVP--QSILLDVAVEHALKRK-PKSTKPPLKGISKVLE 222          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_VIBF1 (Fatty acid oxidation complex subunit alpha OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.198e-12
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 196
            LA D R+  E A +GLPET L I+PG GG+ RLPRL+G   A ++I TG+    KDA++LG+V+
Sbjct:  122 LATDFRLADETASIGLPETQLGIMPGWGGSVRLPRLIGADPAMEVITTGKPKRAKDALALGMVD 185          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECHD3_MOUSE (Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Mus musculus GN=Echdc3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.198e-12
Identity = 37/138 (26.81%), Postives = 69/138 (50.00%), Query Frame = 2
Query:    8 ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKP 421
            +CD+ +  + +    P   + +         L R V + VA +++FTG  +S ++A+  GL++  VP  Q + + + IA++I+      + + K    K L  D+ +A  L  +  +  L  +D  EG+ AF +KRKP
Sbjct:  160 SCDIAVASDKSSFATPGVNVGLFCSTPAVA-LGRAVPRKVALEMLFTGEPISAQEALRHGLISKVVPEEQLEAETMRIAKKISSLSRSVVALGKATFYKQLPQDLRTAYFLASQAMVDNLALQDGQEGIEAFIQKRKP 296          
The following BLAST results are available for this feature:
BLAST of CX300207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
MENB_HAEIN1.652e-1231.69Naphthoate synthase OS=Haemophilus influenzae GN=m... [more]
FADB_SERP52.157e-1246.34Fatty acid oxidation complex subunit alpha OS=Serr... [more]
MENB_PASMU2.818e-1230.28Naphthoate synthase OS=Pasteurella multocida GN=me... [more]
ECHP_RAT2.818e-1234.81Peroxisomal bifunctional enzyme OS=Rattus norvegic... [more]
ECHD3_HUMAN4.806e-1226.95Enoyl-CoA hydratase domain-containing protein 3, m... [more]
MENB_ECOLI6.277e-1229.58Naphthoate synthase OS=Escherichia coli (strain K1... [more]
MENB_ECOL66.277e-1229.58Naphthoate synthase OS=Escherichia coli O6 GN=menB... [more]
FADJ_IDILO6.277e-1238.68Fatty acid oxidation complex subunit alpha OS=Idio... [more]
FADB_VIBF18.198e-1251.56Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
ECHD3_MOUSE8.198e-1226.81Enoyl-CoA hydratase domain-containing protein 3, m... [more]

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Properties
Property NameValue
Genbank descriptionC07007D11SK SaltLeaf1 Citrus clementina cDNA clone C07007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300207 ID=CX300207; Name=CX300207; organism=Citrus clementina; type=EST; length=448bp
GGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCT
TGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGG
CTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACTGG
CCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTACT
GTGTTCCTGCTGGTCAAGCTCAGCTGAAGGCACTTGAAATTGCTCAGGAA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCAGCATTGGAACTGGAAGAAGAGT
GCTACATTGGGACCTTGCATACAGAGGATCGGTTGGAGGGCTTGGCTGCA
TTTGCCGAGAAGCGGAAACCCAAGTACACCGGCACATAGAGAGAAAGA
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