CX300207

Overview
NameCX300207
Unique NameCX300207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9464 contig Ccv1_Contig9464:570..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_VIBFM (Fatty acid oxidation complex subunit alpha OS=Vibrio fischeri (strain MJ11) GN=fadB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.071e-11
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 196
            LA D R+  E A +GLPET L I+PG GG+ RLPRL+G   A ++I TG+    KDA++LG+++
Sbjct:  122 LATDFRLADETASIGLPETQLGIMPGWGGSVRLPRLIGADPAMEVITTGKPKRAKDALALGMID 185          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_ERWCT (Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora subsp. atroseptica GN=fadB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.071e-11
Identity = 45/103 (43.69%), Postives = 57/103 (55.34%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLE 313
            LA D R+    A +GLPET L I+PG GGT RLPRL+G   A +II  G+ VS  DA+ +GLV   V    A  K +          P AI+M K+AI   L+
Sbjct:  122 LATDFRLATPDARIGLPETKLGIMPGFGGTVRLPRLLGADSALEIIAAGKDVSAADALKVGLVQAVV----ANEKLI----------PAAIKMLKQAINGELD 210          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECHP_MOUSE (Peroxisomal bifunctional enzyme OS=Mus musculus GN=Ehhadh PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.071e-11
Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVD--MASALELEEECYIGTLHTEDRLEGLAA 400
            AL C  RI    A +G PE  L I+PGA GTQ LPR+VG  VA D+I +GR +S  +A+ LG+++  V +   + +A++ AQ +  K     R+  + +     +D   A A+    + Y G L  E  +  + A
Sbjct:  104 ALGCHYRIANAKARVGFPEVMLGILPGARGTQLLPRVVGVPVALDLITSGRHISTDEALKLGILDVVVKSDPVE-EAIKFAQTVIGKPIEPRRILNKPVPSLPNMDSVFAEAIAKVRKQYPGRLAPETCVRSVQA 237          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_YERPY (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fadB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCV 205
            LA D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V
Sbjct:  122 LATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVV 188          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_YERPS (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis GN=fadB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCV 205
            LA D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V
Sbjct:  122 LATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVV 188          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_YERPP (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis (strain Pestoides F) GN=fadB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCV 205
            LA D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V
Sbjct:  122 LATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVV 188          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_YERPN (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCV 205
            LA D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V
Sbjct:  122 LATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVV 188          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_YERPG (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Angola) GN=fadB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCV 205
            LA D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V
Sbjct:  122 LATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVV 188          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_YERPE (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis GN=fadB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCV 205
            LA D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V
Sbjct:  122 LATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVV 188          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_YERPB (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=fadB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCV 205
            LA D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V
Sbjct:  122 LATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVV 188          
The following BLAST results are available for this feature:
BLAST of CX300207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
FADB_VIBFM1.071e-1150.00Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_ERWCT1.071e-1143.69Fatty acid oxidation complex subunit alpha OS=Erwi... [more]
ECHP_MOUSE1.071e-1134.07Peroxisomal bifunctional enzyme OS=Mus musculus GN... [more]
FADB_YERPY1.398e-1152.24Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPS1.398e-1152.24Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPP1.398e-1152.24Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPN1.398e-1152.24Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPG1.398e-1152.24Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPE1.398e-1152.24Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPB1.398e-1152.24Fatty acid oxidation complex subunit alpha OS=Yers... [more]

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Properties
Property NameValue
Genbank descriptionC07007D11SK SaltLeaf1 Citrus clementina cDNA clone C07007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300207 ID=CX300207; Name=CX300207; organism=Citrus clementina; type=EST; length=448bp
GGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCT
TGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGG
CTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACTGG
CCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTACT
GTGTTCCTGCTGGTCAAGCTCAGCTGAAGGCACTTGAAATTGCTCAGGAA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCAGCATTGGAACTGGAAGAAGAGT
GCTACATTGGGACCTTGCATACAGAGGATCGGTTGGAGGGCTTGGCTGCA
TTTGCCGAGAAGCGGAAACCCAAGTACACCGGCACATAGAGAGAAAGA
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