CX300207

Overview
NameCX300207
Unique NameCX300207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9464 contig Ccv1_Contig9464:570..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_SHEON (Fatty acid oxidation complex subunit alpha OS=Shewanella oneidensis GN=fadB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 43/103 (41.75%), Postives = 58/103 (56.31%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLE 313
            LA D RI    A +GLPET L IIPG GGT RLPR++G   A + I TG +   +DA+ +G V+  V       +ALE+A         AI+M K A+ + L+
Sbjct:  122 LATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGNEQRAEDALKVGAVDAVVAP-----EALEVA---------AIQMLKDAVAEKLD 210          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_ALISL (Fatty acid oxidation complex subunit alpha OS=Aliivibrio salmonicida (strain LFI1238) GN=fadB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 196
            LA D R+  + A +GLPET L I+PG GG+ RLPRL+G   A ++I TG+    KDA+ +G+V+
Sbjct:  122 LATDFRLADDTASIGLPETQLGIMPGWGGSVRLPRLIGADPAMEVITTGKPKRAKDALKIGMVD 185          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECHP_HUMAN (Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAI 298
            AL C  RI    A +GLPE  L ++PGA GTQ LPRL G   A D+I +GR++   +A+ LG+++  V +   + +A+  AQ ++ +   + R+  + I
Sbjct:  106 ALGCHYRIAHAEAQVGLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPVE-EAIRFAQRVSDQPLESRRLCNKPI 203          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECH1_MOUSE (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Mus musculus GN=Ech1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 39/141 (27.66%), Postives = 73/141 (51.77%), Query Frame = 2
Query:    8 ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLK-ALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPK 424
            ACD+R C + A   + E  + +    G  QRLP+++G +S+  ++ F+ RK+   +A+  GLV+       A L  A  +A +I+ K P+A++ +K  +    +  +  +L+      +  L T+D ++ + A  EKR  K
Sbjct:  180 ACDIRYCTQDAFFQIKEVDMGLAADVGTLQRLPKVIGNQSLVNELTFSARKMMADEALDSGLVSRVFQDKDAMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKRDTK 320          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECHP_CAVPO (Peroxisomal bifunctional enzyme OS=Cavia porcellus GN=EHHADH PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 42/135 (31.11%), Postives = 71/135 (52.59%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITK--GLEVDMASALELEEECYIGTLHTEDRLEGLAA 400
            +L C  RI    A +G PE  L I+PGA GTQ LPRL+G   A D+I +GR ++  +A+ LG+++  V +   + +A++ AQ+I  +     R+  R ++    ++     A+E     + G L  E  +  + A
Sbjct:  108 SLGCHYRIAHAEARIGFPEVTLGILPGARGTQLLPRLIGVPAALDLITSGRHITAGEALKLGILDKVVNSAPVE-EAIKFAQKILNQPLEPRRILNRPVSSLPNMDAIFGEAVEKMRRQHPGQLAPETCVRSVQA 241          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECHD3_XENLA (Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Xenopus laevis GN=echdc3 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.940e-11
Identity = 39/141 (27.66%), Postives = 67/141 (47.52%), Query Frame = 2
Query:    8 ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKYT 430
            +CD+ +  + +    P   + +     G   L R V + VA +++FTG  +S  DA+  GLV+  VP    + +   IA +I Q     + + K    + +   +  A +L  E  +  L  +D  EGL +F +KRKP +T
Sbjct:  153 SCDIAVASDKSRFATPGVNVGLFCSTPGVA-LGRAVPRKVALEMLFTGEPISAHDALLHGLVSKVVPEENLKSETNRIALKICQTSHSVVALGKSTFYRQMAKSLTDAYKLTSEVMVENLAMKDGQEGLKSFIQKRKPVWT 292          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_PSEAE (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa GN=fadB PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQ 247
            LA D R+    A +GLPE  L I PG GGT RLPRL+G   A + I +G++   +DA+ +G V+  V   Q Q  AL++A+
Sbjct:  123 LAADFRVMSATAKVGLPEVKLGIYPGFGGTVRLPRLIGCDNAVEWIASGKENKAEDALKVGAVDAVVAPEQLQAAALDLAK 203          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_PSEAB (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadB PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQ 247
            LA D R+    A +GLPE  L I PG GGT RLPRL+G   A + I +G++   +DA+ +G V+  V   Q Q  AL++A+
Sbjct:  123 LAADFRVMSATAKVGLPEVKLGIYPGFGGTVRLPRLIGCDNAVEWIASGKENKAEDALKVGAVDAVVAPEQLQAAALDLAK 203          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_PSEA8 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa (strain LESB58) GN=fadB PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQ 247
            LA D R+    A +GLPE  L I PG GGT RLPRL+G   A + I +G++   +DA+ +G V+  V   Q Q  AL++A+
Sbjct:  123 LAADFRVMSATAKVGLPEVKLGIYPGFGGTVRLPRLIGCDNAVEWIASGKENKAEDALKVGAVDAVVAPEQLQAAALDLAK 203          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_PSEA7 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa (strain PA7) GN=fadB PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQ 247
            LA D R+    A +GLPE  L I PG GGT RLPRL+G   A + I +G++   +DA+ +G V+  V   Q Q  AL++A+
Sbjct:  123 LAADFRVMSATAKVGLPEVKLGIYPGFGGTVRLPRLIGCDNAVEWIASGKENKAEDALKVGAVDAVVAPEQLQAAALDLAK 203          
The following BLAST results are available for this feature:
BLAST of CX300207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
FADB_SHEON4.069e-1141.75Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_ALISL4.069e-1148.44Fatty acid oxidation complex subunit alpha OS=Alii... [more]
ECHP_HUMAN4.069e-1136.36Peroxisomal bifunctional enzyme OS=Homo sapiens GN... [more]
ECH1_MOUSE4.069e-1127.66Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECHP_CAVPO5.314e-1131.11Peroxisomal bifunctional enzyme OS=Cavia porcellus... [more]
ECHD3_XENLA6.940e-1127.66Enoyl-CoA hydratase domain-containing protein 3, m... [more]
FADB_PSEAE9.064e-1143.21Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEAB9.064e-1143.21Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEA89.064e-1143.21Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEA79.064e-1143.21Fatty acid oxidation complex subunit alpha OS=Pseu... [more]

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Properties
Property NameValue
Genbank descriptionC07007D11SK SaltLeaf1 Citrus clementina cDNA clone C07007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300207 ID=CX300207; Name=CX300207; organism=Citrus clementina; type=EST; length=448bp
GGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCT
TGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGG
CTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACTGG
CCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTACT
GTGTTCCTGCTGGTCAAGCTCAGCTGAAGGCACTTGAAATTGCTCAGGAA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCAGCATTGGAACTGGAAGAAGAGT
GCTACATTGGGACCTTGCATACAGAGGATCGGTTGGAGGGCTTGGCTGCA
TTTGCCGAGAAGCGGAAACCCAAGTACACCGGCACATAGAGAGAAAGA
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