CX300207

Overview
NameCX300207
Unique NameCX300207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9464 contig Ccv1_Contig9464:570..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_BACSU (Probable enoyl-CoA hydratase OS=Bacillus subtilis GN=fadB PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.337e-21
Identity = 57/145 (39.31%), Postives = 81/145 (55.86%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY-CVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            A+AC +RI  E A LGLPE  L IIPG  GTQRLPR VG + A ++I +G  +SGK+A+ LGLV+       +   KA  +A +  +K P  +      +          +L+LE + +     +ED  EG+ AF EKRKP++ G
Sbjct:  113 AMACHIRIAAEDAKLGLPELNLGIIPGFAGTQRLPRYVGTAKALELIGSGEPISGKEALDLGLVSIGAKDEAEVIEKAKALAAKFAEKSPQTLASLLELLYSNKVYSYEGSLKLEAKRFGEAFESEDAKEGIQAFLEKRKPQFKG 257          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CRT_CLODI (3-hydroxybutyryl-CoA dehydratase (Fragment) OS=Clostridium difficile GN=crt PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.671e-20
Identity = 51/134 (38.06%), Postives = 79/134 (58.96%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAF 403
            A+ACD+RI    A  G PE  L I PG GGTQRL RLVG + AK++IFTG+ +   +A  +GLVN  V       +  ++A+ I +   +A+R +K AI  G + D+ + +++E   +     T+D+ EG+ +F
Sbjct:   21 AMACDIRIASAKAKFGQPEVTLGITPGYGGTQRLTRLVGMAKAKELIFTGQVIKADEAEKIGLVNRVVEPDILIEEVEKLAKIIAKNAQLAVRYSKEAIQLGAQTDINTGIDIESNLFGLCFSTKDQKEGIVSF 154          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_SALTI (Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=caiD PE=3 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C E A   LPE  L I+P +GG  RLP+L+  ++  +++ TGR++S ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +            + Y   LH+ED LEG  AFAEKR P + G
Sbjct:  113 ALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQSELMESARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRAPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_SALTY (Carnitinyl-CoA dehydratase OS=Salmonella typhimurium GN=caiD PE=3 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C E A   LPE  L I+P +GG  RLP+L+  ++  +++ TGR++S ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +            + Y   LH+ED LEG  AFAEKR P + G
Sbjct:  113 ALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_SALSV (Carnitinyl-CoA dehydratase OS=Salmonella schwarzengrund (strain CVM19633) GN=caiD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C E A   LPE  L I+P +GG  RLP+L+  ++  +++ TGR++S ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +            + Y   LH+ED LEG  AFAEKR P + G
Sbjct:  113 ALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_SALPK (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A (strain AKU_12601) GN=caiD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C E A   LPE  L I+P +GG  RLP+L+  ++  +++ TGR++S ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +            + Y   LH+ED LEG  AFAEKR P + G
Sbjct:  113 ALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_SALPC (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi C (strain RKS4594) GN=caiD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C E A   LPE  L I+P +GG  RLP+L+  ++  +++ TGR++S ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +            + Y   LH+ED LEG  AFAEKR P + G
Sbjct:  113 ALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_SALPA (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A GN=caiD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C E A   LPE  L I+P +GG  RLP+L+  ++  +++ TGR++S ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +            + Y   LH+ED LEG  AFAEKR P + G
Sbjct:  113 ALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_SALNS (Carnitinyl-CoA dehydratase OS=Salmonella newport (strain SL254) GN=caiD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C E A   LPE  L I+P +GG  RLP+L+  ++  +++ TGR++S ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +            + Y   LH+ED LEG  AFAEKR P + G
Sbjct:  113 ALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRAPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_SALHS (Carnitinyl-CoA dehydratase OS=Salmonella heidelberg (strain SL476) GN=caiD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C E A   LPE  L I+P +GG  RLP+L+  ++  +++ TGR++S ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +            + Y   LH+ED LEG  AFAEKR P + G
Sbjct:  113 ALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVWKG 260          
The following BLAST results are available for this feature:
BLAST of CX300207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
FADB_BACSU4.337e-2139.31Probable enoyl-CoA hydratase OS=Bacillus subtilis ... [more]
CRT_CLODI3.671e-2038.063-hydroxybutyryl-CoA dehydratase (Fragment) OS=Clo... [more]
CAID_SALTI4.795e-2035.81Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=... [more]
CAID_SALTY6.263e-2035.81Carnitinyl-CoA dehydratase OS=Salmonella typhimuri... [more]
CAID_SALSV6.263e-2035.81Carnitinyl-CoA dehydratase OS=Salmonella schwarzen... [more]
CAID_SALPK6.263e-2035.81Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALPC6.263e-2035.81Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALPA6.263e-2035.81Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALNS6.263e-2035.81Carnitinyl-CoA dehydratase OS=Salmonella newport (... [more]
CAID_SALHS6.263e-2035.81Carnitinyl-CoA dehydratase OS=Salmonella heidelber... [more]

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Properties
Property NameValue
Genbank descriptionC07007D11SK SaltLeaf1 Citrus clementina cDNA clone C07007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300207 ID=CX300207; Name=CX300207; organism=Citrus clementina; type=EST; length=448bp
GGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCT
TGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGG
CTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACTGG
CCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTACT
GTGTTCCTGCTGGTCAAGCTCAGCTGAAGGCACTTGAAATTGCTCAGGAA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCAGCATTGGAACTGGAAGAAGAGT
GCTACATTGGGACCTTGCATACAGAGGATCGGTTGGAGGGCTTGGCTGCA
TTTGCCGAGAAGCGGAAACCCAAGTACACCGGCACATAGAGAGAAAGA
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