CX300207

Overview
NameCX300207
Unique NameCX300207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9464 contig Ccv1_Contig9464:570..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_ECOLI (Carnitinyl-CoA dehydratase OS=Escherichia coli (strain K12) GN=caiD PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 4.059e-19
Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C + A   LPE  L I+P +GG  RLP+++  ++  +++ TGR++  ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +  A         + Y   LH+ED +EG  AFAEKR P + G
Sbjct:  113 ALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_ECOLC (Carnitinyl-CoA dehydratase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.059e-19
Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C + A   LPE  L I+P +GG  RLP+++  ++  +++ TGR++  ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +  A         + Y   LH+ED +EG  AFAEKR P + G
Sbjct:  113 ALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_ECOSM (Carnitinyl-CoA dehydratase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.302e-19
Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C + A   LPE  L I+P +GG  RLP+++  ++  +++ TGR++  ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +  A         + Y   LH+ED +EG  AFAEKR P + G
Sbjct:  113 ALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKNYPSVLHSEDAIEGPLAFAEKRDPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_ECOL6 (Carnitinyl-CoA dehydratase OS=Escherichia coli O6 GN=caiD PE=3 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 5.302e-19
Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C + A   LPE  L I+P +GG  RLP+++  ++  +++ TGR++  ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +  A         + Y   LH+ED +EG  AFAEKR P + G
Sbjct:  113 ALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_ECOL5 (Carnitinyl-CoA dehydratase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.302e-19
Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C + A   LPE  L I+P +GG  RLP+++  ++  +++ TGR++  ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +  A         + Y   LH+ED +EG  AFAEKR P + G
Sbjct:  113 ALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_ECO57 (Carnitinyl-CoA dehydratase OS=Escherichia coli O157:H7 GN=caiD PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 9.043e-19
Identity = 49/148 (33.11%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEE----ECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C + A   LPE  L I+P +GG  RLP+++  ++  +++ TGR++  ++A+  G+VN  V   +    A E+AQ++    P+AI   K       E+ +  +         + Y   LH+ED +EG  AFAEKR P + G
Sbjct:  113 ALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEESYSYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CAID_CITK8 (Carnitinyl-CoA dehydratase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.436e-18
Identity = 52/152 (34.21%), Postives = 80/152 (52.63%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKR--------AITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKYTG 433
            ALA D  +C + A   LPE  L I+P +GG  RLP+L+  ++  +++ TGR++  ++A+  G+VN  V        A E+AQ++    P+AI   K          + +G     + AL    + Y   LH+ED +EG  AFAEKR P + G
Sbjct:  113 ALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMLMTGRRMDAEEALRWGIVNRVVSQQALMDSARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGAL----KHYPSVLHSEDAIEGPQAFAEKRDPVWKG 260          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_VIBVY (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain YJ016) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.464e-17
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAIT 301
            ALACD R+C +  A  LGLPE  L ++PG+GGTQRLPRL+G   + D+I TG+++  K A  LG+V+ CVP    Q   L++A++  +KG    + AK+ +T
Sbjct:  120 ALACDFRVCSDDDATRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRAKKAKKLGVVDACVP----QTILLDVAKQFVEKGK---KRAKQKVT 214          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_VIBVU (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus GN=fadJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.216e-16
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAIT 301
            ALACD R+C +  A  LGLPE  L ++PG+GGTQRLPRL+G   + D+I TG+++    A  LG+V+ CVP    Q   L++A++  +KG    + AK+ +T
Sbjct:  120 ALACDFRVCSDDDATRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRANKAKKLGVVDACVP----QTILLDVAKQFVEKGK---KRAKQKVT 214          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_SHEFN (Fatty acid oxidation complex subunit alpha OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.085e-15
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQ 259
            ALAC LR+C +    +LG+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A+ +GLVN  VP       A+E+A++  Q
Sbjct:  120 ALACHLRVCSDDKKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPNSILLETAVELAKKGKQ 207          
The following BLAST results are available for this feature:
BLAST of CX300207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
CAID_ECOLI4.059e-1933.78Carnitinyl-CoA dehydratase OS=Escherichia coli (st... [more]
CAID_ECOLC4.059e-1933.78Carnitinyl-CoA dehydratase OS=Escherichia coli (st... [more]
CAID_ECOSM5.302e-1933.78Carnitinyl-CoA dehydratase OS=Escherichia coli (st... [more]
CAID_ECOL65.302e-1933.78Carnitinyl-CoA dehydratase OS=Escherichia coli O6 ... [more]
CAID_ECOL55.302e-1933.78Carnitinyl-CoA dehydratase OS=Escherichia coli O6:... [more]
CAID_ECO579.043e-1933.11Carnitinyl-CoA dehydratase OS=Escherichia coli O15... [more]
CAID_CITK83.436e-1834.21Carnitinyl-CoA dehydratase OS=Citrobacter koseri (... [more]
FADJ_VIBVY8.464e-1745.10Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_VIBVU3.216e-1644.12Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_SHEFN2.085e-1546.59Fatty acid oxidation complex subunit alpha OS=Shew... [more]

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Properties
Property NameValue
Genbank descriptionC07007D11SK SaltLeaf1 Citrus clementina cDNA clone C07007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300207 ID=CX300207; Name=CX300207; organism=Citrus clementina; type=EST; length=448bp
GGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCT
TGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGG
CTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACTGG
CCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTACT
GTGTTCCTGCTGGTCAAGCTCAGCTGAAGGCACTTGAAATTGCTCAGGAA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCAGCATTGGAACTGGAAGAAGAGT
GCTACATTGGGACCTTGCATACAGAGGATCGGTTGGAGGGCTTGGCTGCA
TTTGCCGAGAAGCGGAAACCCAAGTACACCGGCACATAGAGAGAAAGA
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