CX300210

Overview
NameCX300210
Unique NameCX300210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3620 contig Ccv1_Contig3620:3..434. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA25_ARATH (60S acidic ribosomal protein P2-5 OS=Arabidopsis thaliana GN=RPP2E PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.556e-14
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            MKV+AAYLLA L GN  PS  DLK I+ SVGAE D E+I+   S +K +D+TELIA GREK+
Sbjct:    1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKM 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_SCHPO (60S acidic ribosomal protein P2-alpha OS=Schizosaccharomyces pombe GN=rpp201 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.772e-14
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            MK +AAYLL  +GG   PSA D++++L +VG EA+ ERIE L++E+ GKDI ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_RAT (60S acidic ribosomal protein P2 OS=Rattus norvegicus GN=Rplp2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.731e-13
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            M+ +A+YLLA LGGN+ PSA D+K IL SVG EADDER+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSNPSAKDIKKILDSVGIEADDERLNKVISELNGKNIEDVIAQGVGKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_PODAN (60S acidic ribosomal protein P2 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.731e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            MK +AAYLL  LGG A PSA D+K +L SVG EAD +R++ L+SE++GKD+ ELIA G  KL
Sbjct:    1 MKHLAAYLLLTLGGKATPSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA4_SCHPO (60S acidic ribosomal protein P2-beta OS=Schizosaccharomyces pombe GN=rpp202 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.261e-13
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            MK +AAYLL  +GG   PSA D++++L +VG EA+ ER+E L+SE+ GK+I ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_FUSCU (60S acidic ribosomal protein P2 OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.261e-13
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            MK +AAYLL  LGGN  PSA D+K +L SVG +AD++R+  L+SE++GKDI +LIA G EKL
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_HORSE (60S acidic ribosomal protein P2 OS=Equus caballus GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.953e-13
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            M+ +A+YLLA LGGN  PSA D+K IL SVG EADD+R++ ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLDKVISELNGKNIEDVIAQGIGKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA6_SCHPO (60S acidic ribosomal protein P2-C OS=Schizosaccharomyces pombe GN=rpp203 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            MK +AAYLL  +GG   PSA D++++L +VG E++ ER+E L+ E+ GKDI ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_MOUSE (60S acidic ribosomal protein P2 OS=Mus musculus GN=Rplp2 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            M+ +A+YLLA LGGN+ PSA D+K IL SVG EADD+R+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_HUMAN (60S acidic ribosomal protein P2 OS=Homo sapiens GN=RPLP2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            M+ +A+YLLA LGGN+ PSA D+K IL SVG EADD+R+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKL 62          
The following BLAST results are available for this feature:
BLAST of CX300210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RLA25_ARATH4.556e-1461.2960S acidic ribosomal protein P2-5 OS=Arabidopsis t... [more]
RLA2_SCHPO7.772e-1458.0660S acidic ribosomal protein P2-alpha OS=Schizosac... [more]
RLA2_RAT1.731e-1358.0660S acidic ribosomal protein P2 OS=Rattus norvegic... [more]
RLA2_PODAN1.731e-1359.6860S acidic ribosomal protein P2 OS=Podospora anser... [more]
RLA4_SCHPO2.261e-1356.4560S acidic ribosomal protein P2-beta OS=Schizosacc... [more]
RLA2_FUSCU2.261e-1359.6860S acidic ribosomal protein P2 OS=Fusarium culmor... [more]
RLA2_HORSE2.953e-1356.4560S acidic ribosomal protein P2 OS=Equus caballus ... [more]
RLA6_SCHPO3.857e-1354.8460S acidic ribosomal protein P2-C OS=Schizosacchar... [more]
RLA2_MOUSE3.857e-1356.4560S acidic ribosomal protein P2 OS=Mus musculus GN... [more]
RLA2_HUMAN3.857e-1356.4560S acidic ribosomal protein P2 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC07007E03SK SaltLeaf1 Citrus clementina cDNA clone C07007E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300210 ID=CX300210; Name=CX300210; organism=Citrus clementina; type=EST; length=432bp
AAAAGTCGATCTTTATCGTCTCACCTCTCTGCTATAAGCAAAAATGAAGG
TGATCGCTGCTTACTTGCTCGCCGTTTTGGGTGGCAACGCCAAACCATCG
GCCGATGACTTGAAGAACATTCTTGGATCAGTTGGAGCTGAAGCTGATGA
TGAGAGAATAGAGTTTCTCTTGTCAGAAGTCAAGGGCAAGGATATTACCG
AGCTAATTGCATCCGGAAGGGAGAAGTTGGCATCAGTGCCATCAGGTGGT
GGTGTTGCTGTTGCTGCATCAGCACCTGCTGCAGGTGGTGCTGCTGCTCC
TGCCGCTGAGGCTAAAAAAGAGGAGAAGGTCGAGGAGAAGGAAGAATCTG
ATGATGACATGGGTTTCAGCCTTTTCGACTAAGCTCTCAATGTTGCTTTT
TCTGTATGAAGGATTATTATATTTGGTCATTA
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