CX300210

Overview
NameCX300210
Unique NameCX300210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3620 contig Ccv1_Contig3620:3..434. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_BOVIN (60S acidic ribosomal protein P2 OS=Bos taurus GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.038e-13
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            M+ +A+YLLA LGGN+ PSA D+K IL SVG EADD+R+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIGKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_ASPFU (60S acidic ribosomal protein P2 OS=Aspergillus fumigatus GN=AFUA_2G10100 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.593e-13
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            MK +AAYLL  L GN  PS++D+K +L SVG +AD+ER+  L++E++GKD+ ELIA G  KL
Sbjct:    1 MKHLAAYLLLALAGNTSPSSEDVKAVLSSVGIDADEERLNKLIAELEGKDLQELIAEGSTKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA4_CANAL (60S acidic ribosomal protein P2-B OS=Candida albicans GN=RPP2B PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.500e-12
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            MK +AAYLL V GGN  PSA D+  +L SVG EA++ R++ LL +++GKD+ ELIA G  KL
Sbjct:    1 MKYLAAYLLLVQGGNTSPSASDITALLESVGVEAEESRLQALLKDLEGKDLQELIAEGNTKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_CRYST (60S acidic ribosomal protein P2 OS=Cryptochiton stelleri PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            M+ +AAY+LA LGGN KPS  DLK IL SVG E + +++  +++E+KGK++ E+IA G +KL
Sbjct:    1 MRYVAAYMLATLGGNEKPSESDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEKKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_RHOGU (60S acidic ribosomal protein P2 OS=Rhodotorula glutinis PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.274e-12
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            MK +AAYLL V  GN  PSA+D+K +L +   +AD+ER+  L+ E++GKD+ E+IA G +KL
Sbjct:    1 MKHVAAYLLLVSAGNTSPSAEDVKKVLAAADIQADEERLSVLIKELEGKDVNEVIAEGSKKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_PIG (60S acidic ribosomal protein P2 OS=Sus scrofa GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.241e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            M+ +A+YLLA LGGN  PSA D+K  L SVG EAD +R+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNTSPSAKDIKKXLDSVGIEADXDRLNKVISELNGKNIEDVIAQGIGKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_DROME (60S acidic ribosomal protein P2 OS=Drosophila melanogaster GN=RpLP2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.241e-11
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            M+ +AAYLLAVLGG   P+  DL+ IL SVG E D ER+  ++ E+ GK I +LI  GREKL
Sbjct:    1 MRYVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_EUPRA (60S acidic ribosomal protein P2 OS=Euplotes raikovi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.621e-11
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            MK IAAY L VLGGN+ PSADD+K +L SVG +++ ++++ LL  ++GK + ELI +G  K+
Sbjct:    1 MKYIAAYALLVLGGNSSPSADDVKKVLKSVGVDSEQDKLDALLKNLEGKQLHELIEAGSSKV 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA2_CANAL (60S acidic ribosomal protein P2-A OS=Candida albicans GN=RPP2A PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 229
            MK +AAYLL V  GNA PSA D+K +L +   E ++E++E L+SE  GK++ ELIA G EKL
Sbjct:    1 MKYLAAYLLLVNAGNATPSAADVKAVLSAADIEVEEEKVEKLISESDGKNVEELIAEGNEKL 62          
BLAST of CX300210 vs. ExPASy Swiss-Prot
Match: RLA4_YEAST (60S acidic ribosomal protein P2-beta OS=Saccharomyces cerevisiae GN=RPP2B PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 6.158e-11
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 2
Query:   44 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGK-DITELIASGREK 226
            MK +AAYLL V GGNA PSA D+K ++ SVGAE D+ RI  LLS ++GK  + E+IA G++K
Sbjct:    1 MKYLAAYLLLVQGGNAAPSAADIKAVVESVGAEVDEARINELLSSLEGKGSLEEIIAEGQKK 62          
The following BLAST results are available for this feature:
BLAST of CX300210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RLA2_BOVIN5.038e-1356.4560S acidic ribosomal protein P2 OS=Bos taurus GN=R... [more]
RLA2_ASPFU8.593e-1354.8460S acidic ribosomal protein P2 OS=Aspergillus fum... [more]
RLA4_CANAL2.500e-1254.8460S acidic ribosomal protein P2-B OS=Candida albic... [more]
RLA2_CRYST4.265e-1251.6160S acidic ribosomal protein P2 OS=Cryptochiton st... [more]
RLA2_RHOGU7.274e-1250.0060S acidic ribosomal protein P2 OS=Rhodotorula glu... [more]
RLA2_PIG1.241e-1153.2360S acidic ribosomal protein P2 OS=Sus scrofa GN=R... [more]
RLA2_DROME1.241e-1154.8460S acidic ribosomal protein P2 OS=Drosophila mela... [more]
RLA2_EUPRA1.621e-1150.0060S acidic ribosomal protein P2 OS=Euplotes raikov... [more]
RLA2_CANAL3.610e-1153.2360S acidic ribosomal protein P2-A OS=Candida albic... [more]
RLA4_YEAST6.158e-1156.4560S acidic ribosomal protein P2-beta OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC07007E03SK SaltLeaf1 Citrus clementina cDNA clone C07007E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300210 ID=CX300210; Name=CX300210; organism=Citrus clementina; type=EST; length=432bp
AAAAGTCGATCTTTATCGTCTCACCTCTCTGCTATAAGCAAAAATGAAGG
TGATCGCTGCTTACTTGCTCGCCGTTTTGGGTGGCAACGCCAAACCATCG
GCCGATGACTTGAAGAACATTCTTGGATCAGTTGGAGCTGAAGCTGATGA
TGAGAGAATAGAGTTTCTCTTGTCAGAAGTCAAGGGCAAGGATATTACCG
AGCTAATTGCATCCGGAAGGGAGAAGTTGGCATCAGTGCCATCAGGTGGT
GGTGTTGCTGTTGCTGCATCAGCACCTGCTGCAGGTGGTGCTGCTGCTCC
TGCCGCTGAGGCTAAAAAAGAGGAGAAGGTCGAGGAGAAGGAAGAATCTG
ATGATGACATGGGTTTCAGCCTTTTCGACTAAGCTCTCAATGTTGCTTTT
TCTGTATGAAGGATTATTATATTTGGTCATTA
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