CX300212

Overview
NameCX300212
Unique NameCX300212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300212 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.692e-44
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 3
Query:    6 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 362
            GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+AN DAI +G+F+
Sbjct:  322 GIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of CX300212 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.491e-43
Identity = 84/119 (70.59%), Postives = 97/119 (81.51%), Query Frame = 3
Query:    3 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 359
            KGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +GNF
Sbjct:  321 KGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of CX300212 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.665e-43
Identity = 85/120 (70.83%), Postives = 98/120 (81.67%), Query Frame = 3
Query:    3 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 362
            KGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG ANEDAI+SG+F+
Sbjct:  321 KGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of CX300212 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.663e-43
Identity = 82/117 (70.09%), Postives = 97/117 (82.91%), Query Frame = 3
Query:    3 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSG 353
            KGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVRKW          + L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +G
Sbjct:  316 KGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of CX300212 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.818e-34
Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 3
Query:    6 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 290
            GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW          ++LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  315 GIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
BLAST of CX300212 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.005e-23
Identity = 57/105 (54.29%), Postives = 70/105 (66.67%), Query Frame = 3
Query:    6 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAL 320
            GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR+W          + LVN+++      +  M +  L++YG  +V EQENVKRVQLAD YLS A L
Sbjct:  291 GIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV-AMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394          
BLAST of CX300212 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.831e-18
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 3
Query:    6 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 302
            GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R +            +VNS E  P F++P  T+  L+E  N +V EQ+ ++  QL D+Y
Sbjct:  191 GIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289          
BLAST of CX300212 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.076e-17
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = 3
Query:    6 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 302
            GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R +            +VNS EA P F++P  ++  L+E GN+++ EQ+ V   QL D+Y
Sbjct:  191 GIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289          
The following BLAST results are available for this feature:
BLAST of CX300212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_TOBAC6.692e-4471.43Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC1.491e-4370.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU5.665e-4370.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN9.663e-4370.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA2.818e-3473.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.005e-2354.29Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC2.831e-1842.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP1.076e-1743.43Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07007E06SK SaltLeaf1 Citrus clementina cDNA clone C07007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300212 ID=CX300212; Name=CX300212; organism=Citrus clementina; type=EST; length=417bp
GCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAAG
CTTGTCGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAG
GGCCAGAGTCTATGATGATGAGGTGAGGAAGTGGATCTCTGGTGTTGGTG
TTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACA
TTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTCGAGTACGGAAACAT
GATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAGT
ATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGAAGATGCTATTCAGAGT
GGAAATTTCTATGGCAAAGCAGCCCAGCAAATGAATGTTCCAGTTCCTGA
AGGATGTACTGATCCTA
back to top