CX300215

Overview
NameCX300215
Unique NameCX300215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3057 contig Ccv1_Contig3057:261..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_PORPU (Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.222e-46
Identity = 90/134 (67.16%), Postives = 102/134 (76.12%), Query Frame = 2
Query:   14 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR+G NLL LA+KEQCLALGT+L+ K+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR  +     SIGKNV+PI VKFT
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLYLAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASINSVDHSIGKNVNPINVKFT 135          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_ODOSI (Photosystem I reaction center subunit II OS=Odontella sinensis GN=psaD PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.375e-46
Identity = 90/130 (69.23%), Postives = 101/130 (77.69%), Query Frame = 2
Query:   23 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGGAAIMR G NLL LARKEQCLALGT+LR+     Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR  V     SIGKN +P  +KF+
Sbjct:    3 LNLQTPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFS 132          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_PORYE (Photosystem I reaction center subunit II OS=Porphyra yezoensis GN=psaD PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.599e-45
Identity = 88/133 (66.17%), Postives = 102/133 (76.69%), Query Frame = 2
Query:   14 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKF 409
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR G NLL LA+KEQCLALGT+L+SK+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR  V     SIG+N++P++VKF
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRNGENLLYLAKKEQCLALGTQLKSKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNTGRASVNSVDHSIGQNINPVDVKF 134          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_SKECO (Photosystem I reaction center subunit II OS=Skeletonema costatum GN=psaD PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.037e-44
Identity = 88/130 (67.69%), Postives = 100/130 (76.92%), Query Frame = 2
Query:   23 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGG+AIMR G NLL LARKEQCLAL T+LR+     Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR  V     SIGKN +P  +KF+
Sbjct:    3 LNLKTPFPTFGGSTGGWLRAAEVEEKYAITWTSAKEQIFEMPTGGSAIMRNGENLLYLARKEQCLALSTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFS 132          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_MASLA (Photosystem I reaction center subunit II OS=Mastigocladus laminosus GN=psaD PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.144e-44
Identity = 82/124 (66.13%), Postives = 100/124 (80.65%), Query Frame = 2
Query:   41 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            +PIFGGSTGGLL+KA+VEE Y ITW SPKEQ+FEMPTGGAA MR+G NLL LARKEQC+ALG++LR      Y+ YR++PNGE  Y+HP DGV+PEKVNPGR+ V  N R IG+N  P ++KF+
Sbjct:    9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMPTGGAAKMRQGQNLLYLARKEQCIALGSQLRRLKITDYKIYRIYPNGETAYIHPADGVFPEKVNPGRQKVRYNDRRIGQNPDPAKLKFS 132          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_SYNY3 (Photosystem I reaction center subunit II OS=Synechocystis sp. (strain PCC 6803) GN=psaD PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 1.497e-43
Identity = 86/126 (68.25%), Postives = 98/126 (77.78%), Query Frame = 2
Query:   44 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            P FGGSTGGLL KA  EE Y ITW S  EQ+FEMPTGGAAIM EG NLL LARKEQCLALGT+LR+K+K K   Y+ YRV+P+GEVQYLHP DGV+PEKVN GRE  G   R IG+N  P+ +KF+
Sbjct:    9 PKFGGSTGGLLSKANREEKYAITWTSASEQVFEMPTGGAAIMNEGENLLYLARKEQCLALGTQLRTKFKPKIQDYKIYRVYPSGEVQYLHPADGVFPEKVNEGREAQGTKTRRIGQNPEPVTIKFS 134          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_SYNP6 (Photosystem I reaction center subunit II OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaD PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 5.324e-41
Identity = 80/127 (62.99%), Postives = 97/127 (76.38%), Query Frame = 2
Query:   41 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            +P+FGGSTGGLL+ A+ EE Y ITW S KEQ+FE+PTGGAA+M EG NLL  ARKEQ LALGT+LR+K+K K   Y+ YR FP  +V YLHPKDGV+PEKVN GR   G+  R IG+N +P  +KFT
Sbjct:    9 TPVFGGSTGGLLKSAETEEKYAITWTSTKEQVFELPTGGAAVMHEGDNLLYFARKEQALALGTQLRTKFKPKIESYKIYRFFPGADVGYLHPKDGVFPEKVNEGRSFAGKVDRRIGQNPNPATIKFT 135          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_CYACA (Photosystem I reaction center subunit II OS=Cyanidium caldarium GN=psaD PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.081e-41
Identity = 79/131 (60.31%), Postives = 100/131 (76.34%), Query Frame = 2
Query:   23 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            L+   PSP F G+TGG LR + +EE Y ITW S  E IFE+PTGG A M+ G NLL LA+KEQCLALG +L+ K+KI  ++ YR+FPNGE Q+LHPKDGV+PEKVN GR+ +G+   +IGKN++P EVKFT
Sbjct:    5 LNLKMPSPEFYGNTGGWLRSSDIEEKYAITWSSKNEDIFEIPTGGVAKMKAGDNLLYLAKKEQCLALGNQLKIKFKILNFKIYRIFPNGEAQFLHPKDGVFPEKVNEGRKPIGKIDHNIGKNLNPAEVKFT 135          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_THEVL (Photosystem I reaction center subunit II OS=Thermosynechococcus vulcanus GN=psaD PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 6.508e-39
Identity = 77/124 (62.10%), Postives = 93/124 (75.00%), Query Frame = 2
Query:   44 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MREG NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GRE V    RSIG+N +P ++KFT
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFT 132          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_THEEB (Photosystem I reaction center subunit II OS=Thermosynechococcus elongatus (strain BP-1) GN=psaD PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 6.508e-39
Identity = 77/124 (62.10%), Postives = 93/124 (75.00%), Query Frame = 2
Query:   44 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MREG NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GRE V    RSIG+N +P ++KFT
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFT 132          
The following BLAST results are available for this feature:
BLAST of CX300215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_PORPU3.222e-4667.16Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_ODOSI9.375e-4669.23Photosystem I reaction center subunit II OS=Odonte... [more]
PSAD_PORYE1.599e-4566.17Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_SKECO1.037e-4467.69Photosystem I reaction center subunit II OS=Skelet... [more]
PSAD_MASLA5.144e-4466.13Photosystem I reaction center subunit II OS=Mastig... [more]
PSAD_SYNY31.497e-4368.25Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_SYNP65.324e-4162.99Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_CYACA9.081e-4160.31Photosystem I reaction center subunit II OS=Cyanid... [more]
PSAD_THEVL6.508e-3962.10Photosystem I reaction center subunit II OS=Thermo... [more]
PSAD_THEEB6.508e-3962.10Photosystem I reaction center subunit II OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionC07007E09SK SaltLeaf1 Citrus clementina cDNA clone C07007E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300215 ID=CX300215; Name=CX300215; organism=Citrus clementina; type=EST; length=413bp
GGTGGGCTTCACCCCACCAGAACTGGACCCCAACACCCCATCTCCGATCT
TCGGAGGCAGCACCGGCGGGCTGCTGCGGAAGGCTCAGGTGGAAGAGTTT
TATGTGATCACATGGGAGTCTCCTAAGGAGCAAATATTTGAAATGCCCAC
TGGGGGTGCGGCCATTATGAGAGAAGGTCCGAATTTGCTGAAGCTGGCTA
GGAAAGAGCAGTGCTTGGCTCTGGGGACAAGGCTGAGGTCCAAGTACAAG
ATTAAGTACCAGTTTTACCGAGTGTTTCCCAATGGAGAGGTTCAGTATTT
GCATCCCAAGGATGGTGTTTATCCTGAGAAAGTGAACCCCGGAAGGGAAG
GAGTTGGGCAGAATTACAGGTCTATTGGTAAGAATGTGAGTCCTATTGAG
GTCAAGTTTACAG
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