CX300215

Overview
NameCX300215
Unique NameCX300215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3057 contig Ccv1_Contig3057:261..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_SYNEN (Photosystem I reaction center subunit II OS=Synechococcus elongatus naegeli GN=psaD PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 6.508e-39
Identity = 77/124 (62.10%), Postives = 93/124 (75.00%), Query Frame = 2
Query:   44 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MREG NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GRE V    RSIG+N +P ++KFT
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFT 132          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_NOSS8 (Photosystem I reaction center subunit II OS=Nostoc sp. (strain PCC 8009) GN=psaD PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.230e-38
Identity = 79/125 (63.20%), Postives = 96/125 (76.80%), Query Frame = 2
Query:   41 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            +P+F GSTGGLL KA VEE Y ITW SPK Q+FE+PTGGAA M +G NLL LARKEQ +ALG +LR K+KI  Y+ YR+FPNGE  ++HP DGV+PEKVN GRE V    R IG+N SP ++KF+
Sbjct:    8 TPLFAGSTGGLLTKANVEEKYAITWTSPKAQVFELPTGGAATMNQGENLLYLARKEQGIALGGQLR-KFKITDYKIYRIFPNGETTFIHPADGVFPEKVNEGREKVRFVPRRIGQNPSPAQLKFS 131          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_ANAVT (Photosystem I reaction center subunit II OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaD PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 4.218e-38
Identity = 78/125 (62.40%), Postives = 96/125 (76.80%), Query Frame = 2
Query:   41 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            +P+F GSTGGLL KA  EE Y ITW SPK Q+FE+PTGGAA M EG NLL +ARKE  +ALG +LR K+KI  Y+ YR+ P+GE  ++HP DGV+PEKVNPGRE V  N RSIG+N +P +VKF+
Sbjct:    9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIALGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNPGREKVRFNARSIGENPNPSQVKFS 132          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_ANASP (Photosystem I reaction center subunit II OS=Anabaena sp. (strain PCC 7120) GN=psaD PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.571e-37
Identity = 77/125 (61.60%), Postives = 95/125 (76.00%), Query Frame = 2
Query:   41 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            +P+F GSTGGLL KA  EE Y ITW SPK Q+FE+PTGGAA M EG NLL +ARKE  +ALG +LR K+KI  Y+ YR+ P+GE  ++HP DGV+PEKVN GRE V  N RSIG+N +P +VKF+
Sbjct:    9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIALGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNAGREKVRFNARSIGENPNPSQVKFS 132          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_GLOVI (Photosystem I reaction center subunit II OS=Gloeobacter violaceus GN=psaD PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.315e-36
Identity = 79/132 (59.85%), Postives = 95/132 (71.97%), Query Frame = 2
Query:   20 ELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            EL     +P+FGGSTGGLLRKAQ+EE Y+I W S +EQ+FEMPTGGAA M  G N+L LARKEQC AL  +L S +KI+  + YRV+PNGE   + P DGV  EK NPGRE VG   R IG N +P++VKFT
Sbjct:    6 ELPFGGSTPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHALHRQLVSTFKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGYVPRKIGDNPNPVDVKFT 137          
BLAST of CX300215 vs. ExPASy Swiss-Prot
Match: PSAD_FREDI (Photosystem I reaction center subunit II OS=Fremyella diplosiphon GN=psaD PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.795e-36
Identity = 75/125 (60.00%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   41 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFT 412
            +P+F GSTGGLL+KA+VEE Y ITW SPK Q+FE+PTGGAA M++G NLL LARKE  +ALG +LR K+KI  Y+ YR+ P GE   +HP DGV+PEKVN GRE V    R IG+N +P  +KF+
Sbjct:    8 TPLFAGSTGGLLKKAEVEEKYAITWTSPKAQVFELPTGGAATMQQGQNLLYLARKEYGIALGGQLR-KFKITDYKIYRILPGGETTLIHPADGVFPEKVNAGREKVRFVPRRIGENPNPSAIKFS 131          
The following BLAST results are available for this feature:
BLAST of CX300215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_SYNEN6.508e-3962.10Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_NOSS83.230e-3863.20Photosystem I reaction center subunit II OS=Nostoc... [more]
PSAD_ANAVT4.218e-3862.40Photosystem I reaction center subunit II OS=Anabae... [more]
PSAD_ANASP3.571e-3761.60Photosystem I reaction center subunit II OS=Anabae... [more]
PSAD_GLOVI2.315e-3659.85Photosystem I reaction center subunit II OS=Gloeob... [more]
PSAD_FREDI8.795e-3660.00Photosystem I reaction center subunit II OS=Fremye... [more]

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Properties
Property NameValue
Genbank descriptionC07007E09SK SaltLeaf1 Citrus clementina cDNA clone C07007E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300215 ID=CX300215; Name=CX300215; organism=Citrus clementina; type=EST; length=413bp
GGTGGGCTTCACCCCACCAGAACTGGACCCCAACACCCCATCTCCGATCT
TCGGAGGCAGCACCGGCGGGCTGCTGCGGAAGGCTCAGGTGGAAGAGTTT
TATGTGATCACATGGGAGTCTCCTAAGGAGCAAATATTTGAAATGCCCAC
TGGGGGTGCGGCCATTATGAGAGAAGGTCCGAATTTGCTGAAGCTGGCTA
GGAAAGAGCAGTGCTTGGCTCTGGGGACAAGGCTGAGGTCCAAGTACAAG
ATTAAGTACCAGTTTTACCGAGTGTTTCCCAATGGAGAGGTTCAGTATTT
GCATCCCAAGGATGGTGTTTATCCTGAGAAAGTGAACCCCGGAAGGGAAG
GAGTTGGGCAGAATTACAGGTCTATTGGTAAGAATGTGAGTCCTATTGAG
GTCAAGTTTACAG
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