CX308549

Overview
NameCX308549
Unique NameCX308549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length243
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15280 contig Ccv1_Contig15280:247..489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7B_YEAST (60S ribosomal protein L7-B OS=Saccharomyces cerevisiae GN=RPL7B PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.836e-18
Identity = 40/78 (51.28%), Postives = 59/78 (75.64%), Query Frame = -3
Query:    2 QKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 235
            ++ +I+ KR+AK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV Y
Sbjct:   59 ERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAY 136          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7A_YEAST (60S ribosomal protein L7-A OS=Saccharomyces cerevisiae GN=RPL7A PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.836e-18
Identity = 40/78 (51.28%), Postives = 59/78 (75.64%), Query Frame = -3
Query:    2 QKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 235
            ++ +I+ KR+AK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV Y
Sbjct:   59 ERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAY 136          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.837e-18
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = -3
Query:    2 QKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 235
            ++ +I  KREAK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL QI +G F+KV KAT  +L  +EPYV Y
Sbjct:   59 ERAVIDAKREAKASGSYYVEAQPKLVFVVRIKGINKIPPKPRKVLQLLRLTQINSGTFVKVTKATSELLKLIEPYVAY 136          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7_DEBHA (60S ribosomal protein L7 OS=Debaryomyces hansenii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 38/80 (47.50%), Postives = 59/80 (73.75%), Query Frame = -3
Query:    2 EEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 241
            + ++ +I+ KR+AK  G +YV+ + KL+F++RI+GIN + PK +K+LQLLRL QI  GVF+++ KAT  +L   EPY+ Y
Sbjct:   55 DAERAVIKAKRDAKAAGSYYVDAQPKLVFVVRIKGINKIAPKPRKVLQLLRLTQINAGVFVRLTKATSELLKLAEPYIAY 134          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.654e-16
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = -3
Query:    2 EEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 241
            + ++E IRL R AK KG  +V  E KLLF+IRI G+  + PK +K+L+LLRL +I N VF++ NKA   ML  VEPYV Y
Sbjct:   63 QRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMY 142          
The following BLAST results are available for this feature:
BLAST of CX308549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL7B_YEAST2.836e-1851.2860S ribosomal protein L7-B OS=Saccharomyces cerevi... [more]
RL7A_YEAST2.836e-1851.2860S ribosomal protein L7-A OS=Saccharomyces cerevi... [more]
RL7_CANGA4.837e-1852.5660S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL7_DEBHA4.095e-1747.5060S ribosomal protein L7 OS=Debaryomyces hansenii ... [more]
RL7A_SCHPO2.654e-1652.5060S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC21001B12Rv AbsLeaSub1 Citrus clementina cDNA clone C21001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308549 ID=CX308549; Name=CX308549; organism=Citrus clementina; type=EST; length=243bp
CATATGTTACATAGGGCTCAACTCTGTGCAGCATATTGAGTGTGGCTTTG
TTCACTTTCAAAAAGACACCATTAAAAATCTGTCTCAAACGGAGAAGCTG
CAAAATTTTCTTGGTCTTTGGATCAACAGCATTGATACCGCGAATCCTGA
TAATGAACAAAAGCTTAGCTTCTGGGTTGACATAAAATCCACCCTTAAGC
TTGGCCTCACGCTTCAAACGAATGAGTTCTTTTTGCTCTTCAT
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