CX308586

Overview
NameCX308586
Unique NameCX308586
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:257..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB1_PEA (Leghemoglobin-1 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.481e-17
Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = -1
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT++QEALV  S +  K+N     + F+  + E AP+A+ LFSFL D+   +E + KL+ HA  VF +  +SA QLR  G+V +  +TL   GA+H + GV N HF V K +LL+TIK+A
Sbjct:    3 FTDKQEALVNSS-SEFKQNLPGYSILFYTIVLEKAPAAKGLFSFLKDT-AGVEDSPKLQAHAEQVFGLVRDSAAQLRTKGEVVLGNATL---GAIHVQKGVTNPHFVVVKEALLQTIKKA 117          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB2_PHAVU (Leghemoglobin OS=Phaseolus vulgaris PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 5.486e-16
Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = -1
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AFTE+QEALV  SW   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA S+F +  +SA QLR  G V    +    LG++H +  + +  F V K +LL+T+KEA
Sbjct:    3 AFTEKQEALVNSSWEAFKGNIPQYSVVFYTSILEKAPAAKNLFSFLANGVDP--TNPKLTAHAESLFGLVRDSAAQLRANGAVVADAA----LGSIHSQKALNDSQFLVVKEALLKTLKEA 117          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB_PSOTE (Leghemoglobin OS=Psophocarpus tetragonolobus PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = -1
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTE+QEALV  S+   K N  +  + F+  I E AP+A+ LF FL +   P   N KL  HA  +F +  +SA QLR  G V    +    LG++H + GV +  F V K +LL+T+KEA
Sbjct:    4 FTEKQEALVNSSYEAFKANVPQYSVVFYTSILEKAPAAKDLFPFLANGVDP--TNPKLIGHAEKLFGLVHDSAAQLRAKGAVVADAA----LGSLHAQKGVTDPQFVVVKEALLKTVKEA 117          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB2_SOYBN (Leghemoglobin C2 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = -1
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AFTE+QEALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+  G V    +    LG++H +  + +  F V K +LL+TIKEA
Sbjct:    3 AFTEKQEALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLSNGVDP--SNPKLTGHAEKLFGLVRDSAGQLKANGTVVADAA----LGSIHAQKAITDPQFVVVKEALLKTIKEA 117          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB3_SOYBN (Leghemoglobin C3 OS=Glycine max GN=LGB1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.305e-14
Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = -1
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AFT++QEALV  S+   K N  +  + F+  I E AP A+ LFSFL +   P   N KL  HA  +F +  +SA QL+ +G V +  +    LG++H +  + +  F V K +LL+TIKEA
Sbjct:    3 AFTDKQEALVSSSFEAFKTNIPQYSVVFYTSILEKAPVAKDLFSFLANGVDP--TNPKLTGHAEKLFGLVRDSAGQLKASGTVVIDAA----LGSIHAQKAITDPQFVVVKEALLKTIKEA 117          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB2_VICFA (Leghemoglobin 29 OS=Vicia faba GN=LB29 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.305e-14
Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = -1
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSN-VPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT  QEALV  SW    +N     + F+  I E AP A+ +FS L D+N +PL  N  +  H   VF M  ++A QL+  G+V + ++T   LG VH +  V   HF V K +LL+TIKEA
Sbjct:    3 FTLRQEALVNSSWEAFNQNLPLFSVLFYTFILEKAPIAKNMFSVLKDANEIPL-ANPSINAHTEMVFEMVRDAAAQLQTTGQVVLGDTT---LGVVHTQKRVDGLHFMVVKEALLKTIKEA 119          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGBA_SOYBN (Leghemoglobin A OS=Glycine max GN=LBA PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.010e-14
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = -1
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AFTE+Q+ALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+ +G V    +    LG+VH +  V +  F V K +LL+TIK A
Sbjct:    3 AFTEKQDALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLANGVDP--TNPKLTGHAEKLFALVRDSAGQLKASGTVVADAA----LGSVHAQKAVTDPQFVVVKEALLKTIKAA 117          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB1_SOYBN (Leghemoglobin C1 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.494e-13
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = -1
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AFTE+QEALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+  G V    +    L ++H +  V +  F V K +LL+TIKEA
Sbjct:    3 AFTEKQEALVSSSFEAFKANIPQYSVVFYNSILEKAPAAKDLFSFLANGVDP--TNPKLTGHAEKLFALVRDSAGQLKTNGTVVADAA----LVSIHAQKAVTDPQFVVVKEALLKTIKEA 117          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB1_VIGUN (Leghemoglobin-1 OS=Vigna unguiculata GN=LBI PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.677e-13
Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = -1
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AF+++QEALV  ++   K N  +  + F+  I E AP+A+ LFSFL  +N     N KL  HA  +F +  +SA QLR +G V    +    LGAVH +  V +  F V K +L++T+KEA
Sbjct:    3 AFSDKQEALVNGAYEAFKANIPKYSVVFYTTILEKAPAAKNLFSFL--ANGVDATNPKLTGHAEKLFGLVRDSAAQLRASGGVVADAA----LGAVHSQKAVNDAQFVVVKEALVKTLKEA 117          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB2_VIGUN (Leghemoglobin-2 OS=Vigna unguiculata GN=LBII PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12
Identity = 46/121 (38.02%), Postives = 69/121 (57.02%), Query Frame = -1
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AF+++QE LV  ++   K +  +  + F+  I E AP+A+ LFSFL  +N     N KL  HA  +F +  +SA QLR +G V    +    LGAVH +  V +  F V K +L++T+KEA
Sbjct:    3 AFSDKQEGLVNGAYEAFKADIPKYSVVFYTTILEKAPAAKNLFSFL--ANGVDATNPKLTGHAEKLFGLVRDSAAQLRASGGVVADAA----LGAVHSQKAVNDAQFVVVKEALVKTLKEA 117          
The following BLAST results are available for this feature:
BLAST of CX308586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LGB1_PEA6.481e-1744.17Leghemoglobin-1 OS=Pisum sativum PE=1 SV=2[more]
LGB2_PHAVU5.486e-1642.15Leghemoglobin OS=Phaseolus vulgaris PE=2 SV=3[more]
LGB_PSOTE1.765e-1440.83Leghemoglobin OS=Psophocarpus tetragonolobus PE=2 ... [more]
LGB2_SOYBN1.765e-1440.50Leghemoglobin C2 OS=Glycine max PE=1 SV=2[more]
LGB3_SOYBN2.305e-1439.67Leghemoglobin C3 OS=Glycine max GN=LGB1 PE=2 SV=2[more]
LGB2_VICFA2.305e-1441.32Leghemoglobin 29 OS=Vicia faba GN=LB29 PE=2 SV=1[more]
LGBA_SOYBN3.010e-1440.50Leghemoglobin A OS=Glycine max GN=LBA PE=1 SV=2[more]
LGB1_SOYBN1.494e-1340.50Leghemoglobin C1 OS=Glycine max PE=2 SV=2[more]
LGB1_VIGUN5.677e-1339.67Leghemoglobin-1 OS=Vigna unguiculata GN=LBI PE=2 S... [more]
LGB2_VIGUN6.277e-1238.02Leghemoglobin-2 OS=Vigna unguiculata GN=LBII PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC21001F01Rv AbsLeaSub1 Citrus clementina cDNA clone C21001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308586 ID=CX308586; Name=CX308586; organism=Citrus clementina; type=EST; length=447bp
TGCCTCTTTTATGGTTTCCAGTAGTGAAAATTTTGTGACCTCAAAATGCT
CATTAACAACACCATATTTGAAGTGGACAGCTCCTAATTTTTTTAGAGTT
GATTCTCTTACTGTCACTTTGCCTGCTTTCCTCAGTTGCACTGCTGATTC
ACACGTCATAACAAAAACAGACATGGCATGGGTCTTGAGCTTCTGGTTCT
GCTCTAGAGGCACATTTGAGTCTCCCAAGAATGAGAACAGCTTTTGGGCT
GATGGTGCAATCTCAAAGATCCTCAAGAAAAATTTAAGACCCAATTCTCC
AGCATTCTTCTTCATTACATTCCATGACTTAACAACTAAAGCTTCTTGCT
CTTCAGTAAAGGCTCTACCTTCGTTAATGTTGGCCATTGATTTCTATTTG
GACACCTGAGGATTGAATGTGATACACAAAATGTTGTTGAATCCCCG
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