CX308600

Overview
NameCX308600
Unique NameCX308600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length294
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig123 contig Ccv1_Contig123:205..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METAC (30S ribosomal protein S8P OS=Methanosarcina acetivorans GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.804e-19
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G+FE++DD +AG   V L GR+NKCG I PR+ VG    E W  + LP++ FG +++TTS+G+M   EAR K +GG++L + Y
Sbjct:   48 GDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTASFERWEKQFLPAKNFGALIVTTSSGVMSQYEARDKKIGGQLLAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_THEON (30S ribosomal protein S8P OS=Thermococcus onnurineus (strain NA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.900e-19
Identity = 39/83 (46.99%), Postives = 58/83 (69.88%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE++DD RAG   V+L G++NK G I PRF V  +E E W  R LP+ +FG ++++TS G+M H+EA  K +GG+++ + Y
Sbjct:   48 GEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAREYEAWEKRFLPAFEFGILIVSTSQGVMTHKEAIEKGIGGRLIAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_CALMQ (30S ribosomal protein S8P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.900e-19
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFEYV D R GK VV+L GR+N  G I PRF V V E++ W  + LP+RQ G ++LTTS G++ H EAR   VGG ++ + Y
Sbjct:   48 GEFEYVYDGRGGKYVVQLLGRINDIGAIKPRFHVKVDELQKWEEKYLPARQVGILILTTSKGVVSHLEARENRVGGILVAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.293e-18
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GE EY+DD R GK VV+L G++N  G I PRF V  +EI  W  + LP+RQ G +V++TS G+M H EA+ K +GG +L + Y
Sbjct:   48 GEIEYIDDGRGGKYVVQLLGKINDIGAIRPRFPVKYREIVEWEQKYLPARQIGILVISTSQGVMSHLEAKEKKIGGVLLAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METS5 (30S ribosomal protein S8P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps8p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.293e-18
Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFEY+DD R GKI+V+L GR+NKCG I+PR+ +  +E   +  +  R LPS++ G I+++T  G+M H+EA R+  GG VLG+ Y
Sbjct:   48 GEFEYIDDGRWGKILVQLMGRINKCGAITPRYSLTYREMISLPDYIRRYLPSKEIGVIIVSTPKGVMTHKEAARQRTGGIVLGYVY 133          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_THEPD (30S ribosomal protein S8P OS=Thermofilum pendens (strain Hrk 5) GN=rps8p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G+FE +DD R GKIVV L GR+NK GVI PR+ V   E E W    LPSR  G ++++T  G+M H EA+ K +GG +L + Y
Sbjct:   47 GDFELIDDGRGGKIVVNLLGRINKIGVIKPRYPVKKNEFEAWEREYLPSRDVGLLIVSTPKGVMTHREAKEKGLGGVLLAYVY 129          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METIG (30S ribosomal protein S8P OS=Methanococcus igneus GN=rps8p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE+++D RAG   VEL G++NKCG I PR+ V   E E +  R LP+R FG ++++TS GIM H EA+ K +GG+++ + Y
Sbjct:   48 GEFEFIEDGRAGIFKVELIGKINKCGAIKPRYAVKKHEFEKFEKRYLPARDFGLLIVSTSQGIMTHYEAKEKGIGGRLISYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_HALSA (30S ribosomal protein S8P OS=Halobacterium salinarium GN=rps8p PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = -3
Query:   44 FEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 286
            FE+VD+ +AG+  VEL G +N+CG ++PR+ VG    E W  R LP+R +G +V+TTS GIM H EAR   +GG+V+ + Y
Sbjct:   50 FEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_HALS3 (30S ribosomal protein S8P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = -3
Query:   44 FEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 286
            FE+VD+ +AG+  VEL G +N+CG ++PR+ VG    E W  R LP+R +G +V+TTS GIM H EAR   +GG+V+ + Y
Sbjct:   50 FEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_SULAC (30S ribosomal protein S8P OS=Sulfolobus acidocaldarius GN=rps8p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.205e-18
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDV---GVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFEY+DD RAGKI+V+L GR+NKCG ISPR+ +   G+  +  +  + LPS++ G I+++T  G+M H +  R+ +GG  LG+ Y
Sbjct:   48 GEFEYIDDGRAGKIIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGIREKIGGVTLGYVY 133          
The following BLAST results are available for this feature:
BLAST of CX308600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RS8_METAC5.804e-1946.9930S ribosomal protein S8P OS=Methanosarcina acetiv... [more]
RS8_THEON9.900e-1946.9930S ribosomal protein S8P OS=Thermococcus onnurine... [more]
RS8_CALMQ9.900e-1951.8130S ribosomal protein S8P OS=Caldivirga maquilinge... [more]
RS8_PYRCJ1.293e-1849.4030S ribosomal protein S8P OS=Pyrobaculum calidifon... [more]
RS8_METS51.293e-1848.8430S ribosomal protein S8P OS=Metallosphaera sedula... [more]
RS8_THEPD1.689e-1849.4030S ribosomal protein S8P OS=Thermofilum pendens (... [more]
RS8_METIG1.689e-1848.1930S ribosomal protein S8P OS=Methanococcus igneus ... [more]
RS8_HALSA1.689e-1848.1530S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_HALS31.689e-1848.1530S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_SULAC2.205e-1846.5130S ribosomal protein S8P OS=Sulfolobus acidocalda... [more]

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Properties
Property NameValue
Genbank descriptionC21001G03Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308600 ID=CX308600; Name=CX308600; organism=Citrus clementina; type=EST; length=294bp
ACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGAAA
AAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGGTC
CATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGAGG
GAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAAAA
CGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACCAC
AATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAA
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