CX308600

Overview
NameCX308600
Unique NameCX308600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length294
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig123 contig Ccv1_Contig123:205..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_THENV (30S ribosomal protein S8P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.417e-18
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GE EY+DD R GK VV+L G++N  G I PR+ V  +EI  W  + LP+RQ G +V++T+ G+M H EA+ K +GG +L + Y
Sbjct:   48 GEVEYIDDGRGGKYVVQLLGKINDIGPIKPRYPVKYREIVQWEQKFLPARQIGILVISTNQGVMSHVEAKEKKIGGVLLAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_HYPBU (30S ribosomal protein S8P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.417e-18
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEI---EGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFEY+DD R GKI V L GR+NK GVI PRF V  K++     W  + LPSR  G ++++TS G+M H EA ++ +GG +L + Y
Sbjct:   48 GEFEYIDDGRWGKIRVRLLGRINKAGVIKPRFSVKYKDLIRMPDWLRKYLPSRDIGILIISTSQGVMSHREAIQRRIGGVLLAYVY 133          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_ARCFU (30S ribosomal protein S8P OS=Archaeoglobus fulgidus GN=rps8p PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.417e-18
Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = -3
Query:   44 FEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 286
            FEYV++HR GK +VEL+G +N CG I PRF   V E E +  R LP+R FG ++++T+ G+M  ++AR++ +GG +L + Y
Sbjct:   49 FEYVENHRGGKFIVELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGGVLLAYVY 129          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_PYRKO (30S ribosomal protein S8P OS=Pyrococcus kodakaraensis GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.381e-18
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE +DD RAG   V+L G++NK G I PRF V  ++ E W  R LP+ +FG ++++TS G+M H+EA  K +GG+++ + Y
Sbjct:   48 GEFELIDDGRAGIYRVQLIGKINKAGAIKPRFPVKARDYEKWEKRFLPAFEFGILIVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_PYRIL (30S ribosomal protein S8P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.381e-18
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GE EY+DD R GK VV+L G++N  G I PR+ V  +EI  W  + LP+RQ G +V++TS G+M H EA+ + +GG +L + Y
Sbjct:   48 GEIEYIDDGRGGKYVVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVMSHIEAKERKIGGVLLAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_PYRAR (30S ribosomal protein S8P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GE EYVDD R GK +V+L G++N  G I PR+ V  +EI  W  + LP+RQ G +V++TS G++ H EA+ K +GG +L + Y
Sbjct:   48 GEIEYVDDGRGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVVSHIEAKEKKIGGVLLAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_PYRAE (30S ribosomal protein S8P OS=Pyrobaculum aerophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.185e-17
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GE EY+DD + GK +V+L G++N  G I PR+ V  +EI  W  + LP+RQ G ++++TS G+M H EA+ + +GG +L + Y
Sbjct:   48 GEIEYIDDGKGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILIISTSQGVMSHIEAKERKIGGVLLAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_NITMS (30S ribosomal protein S8P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.159e-17
Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE++DD R GK  ++L  ++ KCG ISPRF V   E   W  + LP+   G +++TT+ G+M H EA +K +GG ++G+ Y
Sbjct:   48 GEFEHIDDKRGGKFKIKLLAKITKCGAISPRFKVKTDEFNNWEQQYLPAYDRGMLLVTTNQGVMSHHEATQKGIGGFLIGYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METHJ (30S ribosomal protein S8P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.095e-17
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = -3
Query:   44 EFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 289
            E+  ++D R G+  V ++G +NKCG ISPR+ V + E+E W    LPS+  G ++++TS G+M H +ARR  VGG++LG+ Y
Sbjct:   49 EYTRIEDGRGGQFKVVMSGLINKCGCISPRYSVSLDEMEYWEQLYLPSKNIGMLMISTSKGVMGHHDARRNGVGGELLGYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_PICTO (30S ribosomal protein S8P OS=Picrophilus torridus GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.266e-17
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = -3
Query:   44 FEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 286
            FE +++ R GK  VEL+  +N CGVI PR  V    IE + +R LP++ FG I+LTT+ GIM H EAR+  +GGK+L + Y
Sbjct:   49 FEVIEEERGGKFRVELSDTINNCGVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKLLAYVY 129          
The following BLAST results are available for this feature:
BLAST of CX308600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RS8_THENV6.417e-1846.9930S ribosomal protein S8P OS=Thermoproteus neutrop... [more]
RS8_HYPBU6.417e-1848.8430S ribosomal protein S8P OS=Hyperthermus butylicu... [more]
RS8_ARCFU6.417e-1845.6830S ribosomal protein S8P OS=Archaeoglobus fulgidu... [more]
RS8_PYRKO8.381e-1845.7830S ribosomal protein S8P OS=Pyrococcus kodakaraen... [more]
RS8_PYRIL8.381e-1846.9930S ribosomal protein S8P OS=Pyrobaculum islandicu... [more]
RS8_PYRAR1.095e-1746.9930S ribosomal protein S8P OS=Pyrobaculum arsenatic... [more]
RS8_PYRAE3.185e-1743.3730S ribosomal protein S8P OS=Pyrobaculum aerophilu... [more]
RS8_NITMS4.159e-1743.3730S ribosomal protein S8P OS=Nitrosopumilus mariti... [more]
RS8_METHJ7.095e-1743.9030S ribosomal protein S8P OS=Methanospirillum hung... [more]
RS8_PICTO9.266e-1748.1530S ribosomal protein S8P OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionC21001G03Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308600 ID=CX308600; Name=CX308600; organism=Citrus clementina; type=EST; length=294bp
ACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGAAA
AAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGGTC
CATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGAGG
GAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAAAA
CGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACCAC
AATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAA
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