CX308600

Overview
NameCX308600
Unique NameCX308600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length294
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig123 contig Ccv1_Contig123:205..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METVS (30S ribosomal protein S8P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps8p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.581e-16
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FEY++D +AG   V+L G++NKCG + PR+ V  +E E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:   48 GNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METVA (30S ribosomal protein S8P OS=Methanococcus vannielii GN=rps8p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.581e-16
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FEY++D +AG   V+L G++NKCG + PR+ V  +E E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:   48 GNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_STAMF (30S ribosomal protein S8P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.064e-16
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIE---GWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFEY+DD R GKI V+L GR+NK GVI PRF V ++++E    W  + LP+   G ++L+T  G++ H+EA  K  GG +L + Y
Sbjct:   48 GEFEYIDDGRWGKIKVQLLGRINKTGVIKPRFPVKLRDLERMPHWLRKYLPAYNIGILILSTPHGVLSHKEAIAKKTGGVLLAYVY 133          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_THEAC (30S ribosomal protein S8P OS=Thermoplasma acidophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.696e-16
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = -3
Query:   44 FEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 286
            FE +D+ R GK  + LN  +N CGVI PRF V  + +E + AR LP+  FG ++LTT+ G+M + EAR+  +GGK+L + Y
Sbjct:   49 FEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYEARYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METST (30S ribosomal protein S8P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps8p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.696e-16
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FE VDD +AG   VEL G +NKCGVI PR  V   E E +  R LP++ FG +++TT  G+M H EA+   +GG++L + Y
Sbjct:   48 GNFELVDDGKAGIFNVELVGNINKCGVIKPRHAVKNTEFEDYEKRYLPAKNFGILIVTTPQGVMTHHEAKEAGIGGRLLVYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METM7 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps8p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.696e-16
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FEY++D +AG   V+L G++NKCG + PRF V   + E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:   48 GNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METTL (30S ribosomal protein S8P OS=Methanococcus thermolithotrophicus GN=rps8p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.521e-16
Identity = 34/83 (40.96%), Postives = 58/83 (69.88%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FEY++D RAG   VEL G++NKCG + PR+ V  +E E +  R LP++ FG ++++T  G+M H+EA+ + +GG+++ + +
Sbjct:   48 GNFEYIEDGRAGIYKVELIGQINKCGAVKPRYAVKKQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKNQGLGGRLISYVF 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METM6 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps8p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.521e-16
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FEY++D +AG   V+L G++NKCG + PRF V   + E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:   48 GNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARSAGVGGRLISYIY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_META3 (30S ribosomal protein S8P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps8p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.599e-16
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FEY++D +AG   VEL G +NKCG + PR+ V   E E +  R LP++ FG ++++T  G+M H+EA+   +GG+++ + Y
Sbjct:   48 GNFEYIEDGKAGIYKVELTGHINKCGAVRPRYAVKKTEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKSNGLGGRLISYIY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_CENSY (30S ribosomal protein S8P OS=Cenarchaeum symbiosum GN=rps8p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.599e-16
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE+V+D R GK  V L  ++ KCG ISPRF V   E   W  + LPS   G +V+TT+ G+M H EA  + +GG ++G+ Y
Sbjct:   48 GEFEHVEDSRGGKFSVHLLAKITKCGAISPRFKVKKGEYTFWEQQYLPSYDRGMLVVTTNQGVMSHHEAAERGIGGFLIGYVY 130          
The following BLAST results are available for this feature:
BLAST of CX308600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RS8_METVS1.581e-1642.1730S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_METVA1.581e-1642.1730S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_STAMF2.064e-1646.5130S ribosomal protein S8P OS=Staphylothermus marin... [more]
RS8_THEAC2.696e-1645.6830S ribosomal protein S8P OS=Thermoplasma acidophi... [more]
RS8_METST2.696e-1646.9930S ribosomal protein S8P OS=Methanosphaera stadtm... [more]
RS8_METM72.696e-1642.1730S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_METTL3.521e-1640.9630S ribosomal protein S8P OS=Methanococcus thermol... [more]
RS8_METM63.521e-1642.1730S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_META34.599e-1640.9630S ribosomal protein S8P OS=Methanococcus aeolicu... [more]
RS8_CENSY4.599e-1645.7830S ribosomal protein S8P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionC21001G03Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308600 ID=CX308600; Name=CX308600; organism=Citrus clementina; type=EST; length=294bp
ACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGAAA
AAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGGTC
CATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGAGG
GAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAAAA
CGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACCAC
AATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAA
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