CX308600

Overview
NameCX308600
Unique NameCX308600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length294
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig123 contig Ccv1_Contig123:205..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_THEVO (30S ribosomal protein S8P OS=Thermoplasma volcanium GN=rps8p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.006e-16
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = -3
Query:   44 FEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 286
            FE +D+ R GK  + LN  +N CGVI PRF V  + +E + +R LP+  FG ++LTT+ G+M + EAR+  +GGK+L + Y
Sbjct:   49 FEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYESRYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METVO (30S ribosomal protein S8P OS=Methanococcus voltae GN=rps8p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.006e-16
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FEY++D +AG   V L G++NKCG + PRF V  +E E +  R LP++ FG ++++T  G+M H+EA+   +GG+++ + Y
Sbjct:   48 GNFEYIEDGKAGVYKVTLIGQINKCGAVKPRFAVKNQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKDSGIGGRLISYIY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METMP (30S ribosomal protein S8P OS=Methanococcus maripaludis GN=rps8p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.006e-16
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FEY++D +AG   V+L G++NKCG + PR+ V   + E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:   48 GNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METM5 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps8p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.006e-16
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FEY++D +AG   V+L G++NKCG + PR+ V   + E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:   48 GNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_IGNH4 (30S ribosomal protein S8P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps8p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.844e-16
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFEY+DD R GKI V L GR+NKCG I PR  V  ++   +     R LPS+  G ++++TS G+M H+EA +K VGG  + + Y
Sbjct:   48 GEFEYIDDGRWGKIRVRLLGRINKCGAIKPRVSVSYRDLLVLPEHLRRFLPSKDVGILIISTSQGLMTHKEAIQKRVGGIAIAYVY 133          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_DESK1 (30S ribosomal protein S8P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps8p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.282e-15
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEI---EGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFEY+DD R GKI ++L GR+NK GVI PR+ V  +E+     W  R LP+   G I+++T  G++ H+EA  K  GG +L + Y
Sbjct:   48 GEFEYIDDGRWGKIKIQLLGRINKIGVIKPRYPVKHRELAEFPEWLKRYLPAYNIGVIIVSTPYGVLSHKEAVEKQTGGVLLAYCY 133          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_AERPE (30S ribosomal protein S8P OS=Aeropyrum pernix GN=rps8p PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.385e-12
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARL---LPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FEY+DD R GK  V+L GR+N  GV+ PR  V  +E+      L   L SR  G ++L+T  G+M H EA ++ +GG V+ + Y
Sbjct:   48 GGFEYIDDGRWGKFRVKLLGRINDIGVVKPRTPVSYRELAKMPEHLRKYLASRDVGLLILSTPQGVMTHREALKRKIGGIVIAYVY 133          
The following BLAST results are available for this feature:
BLAST of CX308600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RS8_THEVO6.006e-1644.4430S ribosomal protein S8P OS=Thermoplasma volcaniu... [more]
RS8_METVO6.006e-1640.9630S ribosomal protein S8P OS=Methanococcus voltae ... [more]
RS8_METMP6.006e-1640.9630S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_METM56.006e-1640.9630S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_IGNH47.844e-1646.5130S ribosomal protein S8P OS=Ignicoccus hospitalis... [more]
RS8_DESK12.282e-1545.3530S ribosomal protein S8P OS=Desulfurococcus kamch... [more]
RS8_AERPE1.385e-1241.8630S ribosomal protein S8P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC21001G03Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308600 ID=CX308600; Name=CX308600; organism=Citrus clementina; type=EST; length=294bp
ACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGAAA
AAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGGTC
CATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGAGG
GAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAAAA
CGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACCAC
AATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAA
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