CX308789

Overview
NameCX308789
Unique NameCX308789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4247 contig Ccv1_Contig4247:373..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: CHEY_YERPE (Chemotaxis protein cheY OS=Yersinia pestis GN=cheY PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = -2
Query:  295 LRVLVVDDDITVXRILEQMLRRC-LYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNIWQ 636
            LR LVVDD  T+ RI+  +L+    +NV        ALN LR   G FD V+SD +MP+MDG  LL+ I   G    LPV+M++A+ +   ++   + GA  Y++KP      EE+L  I++
Sbjct:    6 LRFLVVDDFSTMRRIVRNLLKELGFHNVEEAEDGVDALNKLRA--GGFDFVVSDWNMPNMDGLDLLKTIRTDGALATLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: APRR8_ARATH (Putative two-component response regulator-like APRR8 OS=Arabidopsis thaliana GN=APRR8 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 54/227 (23.79%), Postives = 107/227 (47.14%), Query Frame = -2
Query:   25 DQFPAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN-----------ENKEHENSGSLEETDHHKRGSDEIE------YASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAV 654
            ++F   + VL++D D T    L +M+R+C Y V   ++A     I+  +    D+VL++  + +M+ ++LLE I    ++PV++  A  +  A++  +  GA   L KP+ E + K +WQ  V ++ N           +N    ++ SL         + E+E      Y   + +G +   +A        E+++G     D    KKP+++++ +L  + + AV
Sbjct:    8 ERFSNDICVLLLDSDATCLANLSEMIRKCGYKVVATTRADDLPLIINNKDKKIDLVLAEFRLIEMNKYELLEKIRSICEIPVVVSGAHVK-DAIVECLCRGAKLCLEKPLMENDFKILWQFTVSRQRNFRSQIDINPPEKNHSITHTQSLGAELKKNNNNSEVETEDLDKYKDELGQGNKRKERADTDTGEHTEKNNG----SDLGDQKKPKLLFADDLQNETLEAV 229          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: CHEY_YEREN (Chemotaxis protein cheY OS=Yersinia enterocolitica GN=cheY PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = -2
Query:  295 LRVLVVDDDITVXRILEQMLRRCLYN-VTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNIWQ 636
            LR LVVDD  T+ RI+  +L+   +N V        ALN LR   G FD V+SD +MP+MDG  LL+ I   G    LPV+M++A+ +   ++   + GA  Y++KP      EE+L  I++
Sbjct:    6 LRFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLRT--GGFDFVVSDWNMPNMDGLDLLKTIRADGALGTLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: AFSQ1_STRCO (Transcriptional regulatory protein afsQ1 OS=Streptomyces coelicolor GN=afsQ1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 40/131 (30.53%), Postives = 73/131 (55.73%), Query Frame = -2
Query:  238 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSL 630
            +L+++DD  +   LE  L R  + V T +     L +LRE++   D+++ DV +P +DGF++   I     LP+I+++A      V+ G+  GA DY++KP++   L    + V+R+   E+ +  + GSL
Sbjct:    4 LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRP--DLIVLDVMLPGIDGFEVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERESTDSASFGSL 132          
The following BLAST results are available for this feature:
BLAST of CX308789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHEY_YERPE1.510e-1138.52Chemotaxis protein cheY OS=Yersinia pestis GN=cheY... [more]
APRR8_ARATH2.575e-1123.79Putative two-component response regulator-like APR... [more]
CHEY_YEREN5.737e-1138.52Chemotaxis protein cheY OS=Yersinia enterocolitica... [more]
AFSQ1_STRCO5.737e-1130.53Transcriptional regulatory protein afsQ1 OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionC21003G12Rv AbsLeaSub1 Citrus clementina cDNA clone C21003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308789 ID=CX308789; Name=CX308789; organism=Citrus clementina; type=EST; length=655bp
AGCCTTATCAATCCCAAGCTGATTTACAGCACTGACAAATTGCTGATGTA
GCTCTACTGACCACACTACACGTGGTTTCTTTGTCGTGGAAGGATCATCG
CTTTCCAGTTCACCATCATCTTCTTCTTTAGCACTAATCCTCTTTCTCTG
AGCTTTAAATGTTCCTTCTGTTCCTTCGTTAACAGAAGAAGCATATTCAA
TTTCATCACTTCCTCTTTTATGATGATCAGTTTCTTCCAAGCTGCCAGAA
TTTTCATGTTCTTTATTTTCATTCCACCTTTTCCGAACAACATGCTGCCA
TATATTCTTAAGCTCCTCTTCACGTATAGGCTTAATCAAGTAATCACAAG
CTCCATGTCTAATTCCCCTCATAACAGCAGATACCCTTCCATCAGCTGAC
ATCATGATAACAGGAAGATCCATTTCAAGTCCAATATGTTCAAGAAGTTT
GAAGCCATCCATATCAGGCATGTGAACGTCACTTAACACCACATCAAAAC
AGCCCTTCCTCTCCCGTAGAATATTCAAAGCAACAGCTGCCTGGGAGCAT
GTAGTTACGTTGTAGAGGCATCGACGAAGCATCTGCTCGAGAATTCGCAN
GACAGTAATGTCATCGTCAACAACAAGAACCCTTAGTCCAGCAGGAAACT
GATCA
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