CX308817

Overview
NameCX308817
Unique NameCX308817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:258..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: HBP1_CASGL (Hemoglobin-1 OS=Casuarina glauca PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.836e-25
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = 2
Query:   86 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            A TE+QEAL+ +SW V+K+N     L+ F  I E AP ++ +FSFL+DSN   E N KLK HA  +F   CESA +LR+ G      +TLK+LG++H K  + + HFEV K +LL TIKE
Sbjct:    2 ALTEKQEALLKQSWEVLKQNIPAHSLRLFALIIEAAPESKYVFSFLKDSNEIPENNPKLKAHAAVIFKTICESATELRQKGHAVWDNNTLKRLGSIHLKNKITDPHFEVMKGALLGTIKE 121          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB_CANLI (Leghemoglobin OS=Canavalia lineata PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.437e-21
Identity = 57/120 (47.50%), Postives = 75/120 (62.50%), Query Frame = 2
Query:   86 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            AF+E+QE+LV  SW   K+N       F+  I E AP+AQ +FSFL +   P   N KLK HA  VF MT +SAVQLR  G+V + + T   LG+VH + GV++ HF V K +LL+T KE
Sbjct:    3 AFSEKQESLVKSSWEAFKQNVPHHSAVFYTLILEKAPAAQNMFSFLSNGVDP--NNPKLKAHAEKVFKMTVDSAVQLRAKGEVVLADPT---LGSVHVQKGVLDPHFLVVKEALLKTFKE 117          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB2_MEDTR (Leghemoglobin 2 OS=Medicago truncatula GN=LB2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.437e-21
Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = 2
Query:   89 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            FTE+QEALV  SW + K+N G   L F+  I E AP+A+ +FSFL+D+   ++ + KL++HA  VF M  +SAVQLR  G V + ++TL   GA+H + GVV+ HF V K +LL+TIKE
Sbjct:    3 FTEKQEALVNSSWELFKQNPGNSVL-FYTIILEKAPAAKGMFSFLKDT-AGVQDSPKLQSHAEKVFGMVRDSAVQLRATGGVVLGDATL---GAIHIQKGVVDPHFVVVKEALLKTIKE 116          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB3_PEA (Leghemoglobin Lb120-1 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.610e-20
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 2
Query:   89 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            FTE+QEALV  SW + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QLR +G+V V ++TL   GA+H + GVV+ HF V K +LLETIKE
Sbjct:    3 FTEKQEALVNSSWELFKQNPS-YSVLFYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVVGDATL---GAIHIQKGVVDPHFVVVKEALLETIKE 116          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB2_LUPLU (Leghemoglobin-2 OS=Lupinus luteus PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.610e-20
Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = 2
Query:   86 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            A TE Q ALV  SW     N  +   +FF+ + EIAP+A+ LFSFL+ ++   + N +L+ HA  VF +  E+A+QL+  G V V ++TLK LG+VH   GV + HF V K ++L+TIKE
Sbjct:    3 ALTESQAALVKSSWEEFNANIPKHTHRFFILVLEIAPAAKDLFSFLKGTSEVPQNNPELQAHAGKVFKLVYEAAIQLQVTG-VVVTDATLKNLGSVHVSKGVADAHFPVVKEAILKTIKE 121          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB6_PEA (Leghemoglobin Lb120-34 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.586e-20
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 2
Query:   89 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            FTE+QEALV  SW + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QLR +G+V + ++TL   GA+H + GVV+ HF V K +LLETIKE
Sbjct:    3 FTEKQEALVNSSWELFKQNPS-YSVLFYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVLGDATL---GAIHIQKGVVDPHFVVVKEALLETIKE 116          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB3_MEDSA (Leghemoglobin-3 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.684e-20
Identity = 57/119 (47.90%), Postives = 79/119 (66.39%), Query Frame = 2
Query:   89 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            FT++QEALV  SW   K+N G   L F+  I E AP+A+ +FSFL+DS   ++ + KL++HA  VF M  +SA QLR  G V + ++TL   GA+H + GVV+ HF V K +LL+TIKE
Sbjct:    3 FTDKQEALVNSSWESFKQNPGNSVL-FYTIILEKAPAAKGMFSFLKDS-AGVQDSPKLQSHAEKVFGMVRDSAAQLRATGGVVLGDATL---GAIHIQKGVVDPHFAVVKEALLKTIKE 116          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB5_PEA (Leghemoglobin Lb120-29 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 7.989e-20
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 2
Query:   89 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            FT++QEALV  SW + K+N G   + F+  I + AP+ + +FSFL+DS   +  + KL+ HA  VF M  +SAVQLR +G+V + ++TL   GA+H + GVV+ HF V K +LLETIKE
Sbjct:    3 FTDKQEALVNSSWELFKQNPG-YSVLFYNIILKKAPATKGMFSFLKDS-AGVVDSPKLQAHAEKVFGMVHDSAVQLRVSGEVVLGDATL---GAIHIQKGVVDSHFVVVKEALLETIKE 116          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB4_MEDSA (Leghemoglobin OS=Medicago sativa GN=LB3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.989e-20
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 2
Query:   89 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            FT +QEALV  SW   K+N     + F+  I E AP+A+ +FSFL+DS   ++ + +L+ HA  VF M  +SAVQLR  G+V + ++T   LG++H + GVV+ HF V K +LL+TIKE
Sbjct:    3 FTADQEALVNSSWESFKQNLPGYSVFFYTTILEKAPAAKGMFSFLKDS-AGVQDSPQLQAHAEKVFGMVRDSAVQLRATGEVVLGDAT---LGSIHIQKGVVDPHFVVVKEALLKTIKE 117          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB1_MEDSA (Leghemoglobin-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.043e-19
Identity = 53/120 (44.17%), Postives = 79/120 (65.83%), Query Frame = 2
Query:   86 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            +FT++QEALV  SW   K+N     + F+  + E AP+A+ LFSFL++S   ++ + +L+ HA  VF +  +SAVQLR  G V + ++T   LGA+H + GVV+ HF V K +LL+TIKE
Sbjct:    2 SFTDKQEALVNSSWEAFKQNLPRYSVFFYTVVLEKAPAAKGLFSFLKNS-AEVQDSPQLQAHAEKVFGLVRDSAVQLRATGGVVLGDAT---LGAIHVRKGVVDPHFVVVKEALLKTIKE 117          
The following BLAST results are available for this feature:
BLAST of CX308817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBP1_CASGL4.836e-2548.33Hemoglobin-1 OS=Casuarina glauca PE=1 SV=2[more]
LGB_CANLI9.437e-2147.50Leghemoglobin OS=Canavalia lineata PE=2 SV=1[more]
LGB2_MEDTR9.437e-2148.74Leghemoglobin 2 OS=Medicago truncatula GN=LB2 PE=2... [more]
LGB3_PEA1.610e-2047.90Leghemoglobin Lb120-1 OS=Pisum sativum PE=2 SV=3[more]
LGB2_LUPLU1.610e-2044.17Leghemoglobin-2 OS=Lupinus luteus PE=1 SV=2[more]
LGB6_PEA3.586e-2047.06Leghemoglobin Lb120-34 OS=Pisum sativum PE=2 SV=3[more]
LGB3_MEDSA4.684e-2047.90Leghemoglobin-3 OS=Medicago sativa PE=2 SV=1[more]
LGB5_PEA7.989e-2047.06Leghemoglobin Lb120-29 OS=Pisum sativum PE=2 SV=3[more]
LGB4_MEDSA7.989e-2045.38Leghemoglobin OS=Medicago sativa GN=LB3 PE=2 SV=1[more]
LGB1_MEDSA1.043e-1944.17Leghemoglobin-1 OS=Medicago sativa PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC21004B10Rv AbsLeaSub1 Citrus clementina cDNA clone C21004B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308817 ID=CX308817; Name=CX308817; organism=Citrus clementina; type=EST; length=447bp
GCGGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCA
AATAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAG
CAAGAAGCTTTAGTTGTCAAGTCATGGAATGTAATGAAGAAGAATGCTGG
AGAATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAG
CCCAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAG
AACCAGAAGCTCAAGACCCATGCCATGTCTGTTTTTGTTATGACGTGTGA
ATCAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAA
CTCTAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAG
CATTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAGAGGC
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