CX308817

Overview
NameCX308817
Unique NameCX308817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:258..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB1_PEA (Leghemoglobin-1 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.330e-17
Identity = 52/119 (43.70%), Postives = 76/119 (63.87%), Query Frame = 2
Query:   89 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            FT++QEALV  S +  K+N     + F+  + E AP+A+ LFSFL+D+   +E + KL+ HA  VF +  +SA QLR  G+V +  +TL   GA+H + GV N HF V K +LL+TIK+
Sbjct:    3 FTDKQEALVNSS-SEFKQNLPGYSILFYTIVLEKAPAAKGLFSFLKDT-AGVEDSPKLQAHAEQVFGLVRDSAAQLRTKGEVVLGNATL---GAIHVQKGVTNPHFVVVKEALLQTIKK 116          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB2_PHAVU (Leghemoglobin OS=Phaseolus vulgaris PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 2.036e-15
Identity = 50/120 (41.67%), Postives = 69/120 (57.50%), Query Frame = 2
Query:   86 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            AFTE+QEALV  SW   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA S+F +  +SA QLR  G V    +    LG++H +  + +  F V K +LL+T+KE
Sbjct:    3 AFTEKQEALVNSSWEAFKGNIPQYSVVFYTSILEKAPAAKNLFSFLANGVDP--TNPKLTAHAESLFGLVRDSAAQLRANGAVVADAA----LGSIHSQKALNDSQFLVVKEALLKTLKE 116          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB2_VICFA (Leghemoglobin 29 OS=Vicia faba GN=LB29 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.251e-14
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 2
Query:   89 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSN-VPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            FT  QEALV  SW    +N     + F+  I E AP A+ +FS L+D+N +PL  N  +  H   VF M  ++A QL+  G+V + ++T   LG VH +  V   HF V K +LL+TIKE
Sbjct:    3 FTLRQEALVNSSWEAFNQNLPLFSVLFYTFILEKAPIAKNMFSVLKDANEIPL-ANPSINAHTEMVFEMVRDAAAQLQTTGQVVLGDTT---LGVVHTQKRVDGLHFMVVKEALLKTIKE 118          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB_PSOTE (Leghemoglobin OS=Psophocarpus tetragonolobus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.551e-14
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 2
Query:   89 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            FTE+QEALV  S+   K N  +  + F+  I E AP+A+ LF FL +   P   N KL  HA  +F +  +SA QLR  G V    +    LG++H + GV +  F V K +LL+T+KE
Sbjct:    4 FTEKQEALVNSSYEAFKANVPQYSVVFYTSILEKAPAAKDLFPFLANGVDP--TNPKLIGHAEKLFGLVHDSAAQLRAKGAVVADAA----LGSLHAQKGVTDPQFVVVKEALLKTVKE 116          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB2_SOYBN (Leghemoglobin C2 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 6.551e-14
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 2
Query:   86 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            AFTE+QEALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+  G V    +    LG++H +  + +  F V K +LL+TIKE
Sbjct:    3 AFTEKQEALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLSNGVDP--SNPKLTGHAEKLFGLVRDSAGQLKANGTVVADAA----LGSIHAQKAITDPQFVVVKEALLKTIKE 116          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGBA_SOYBN (Leghemoglobin A OS=Glycine max GN=LBA PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 8.555e-14
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 2
Query:   86 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIK 442
            AFTE+Q+ALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+ +G V    +    LG+VH +  V +  F V K +LL+TIK
Sbjct:    3 AFTEKQDALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLANGVDP--TNPKLTGHAEKLFALVRDSAGQLKASGTVVADAA----LGSVHAQKAVTDPQFVVVKEALLKTIK 115          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB3_SOYBN (Leghemoglobin C3 OS=Glycine max GN=LGB1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 8.555e-14
Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 2
Query:   86 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            AFT++QEALV  S+   K N  +  + F+  I E AP A+ LFSFL +   P   N KL  HA  +F +  +SA QL+ +G V +  +    LG++H +  + +  F V K +LL+TIKE
Sbjct:    3 AFTDKQEALVSSSFEAFKTNIPQYSVVFYTSILEKAPVAKDLFSFLANGVDP--TNPKLTGHAEKLFGLVRDSAGQLKASGTVVIDAA----LGSIHAQKAITDPQFVVVKEALLKTIKE 116          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB1_SOYBN (Leghemoglobin C1 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.545e-13
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 2
Query:   86 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            AFTE+QEALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+  G V    +    L ++H +  V +  F V K +LL+TIKE
Sbjct:    3 AFTEKQEALVSSSFEAFKANIPQYSVVFYNSILEKAPAAKDLFSFLANGVDP--TNPKLTGHAEKLFALVRDSAGQLKTNGTVVADAA----LVSIHAQKAVTDPQFVVVKEALLKTIKE 116          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB1_VIGUN (Leghemoglobin-1 OS=Vigna unguiculata GN=LBI PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.613e-12
Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 2
Query:   86 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            AF+++QEALV  ++   K N  +  + F+  I E AP+A+ LFSFL  +N     N KL  HA  +F +  +SA QLR +G V    +    LGAVH +  V +  F V K +L++T+KE
Sbjct:    3 AFSDKQEALVNGAYEAFKANIPKYSVVFYTTILEKAPAAKNLFSFL--ANGVDATNPKLTGHAEKLFGLVRDSAAQLRASGGVVADAA----LGAVHSQKAVNDAQFVVVKEALVKTLKE 116          
BLAST of CX308817 vs. ExPASy Swiss-Prot
Match: LGB2_VIGUN (Leghemoglobin-2 OS=Vigna unguiculata GN=LBII PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = 2
Query:   86 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 445
            AF+++QE LV  ++   K +  +  + F+  I E AP+A+ LFSFL  +N     N KL  HA  +F +  +SA QLR +G V    +    LGAVH +  V +  F V K +L++T+KE
Sbjct:    3 AFSDKQEGLVNGAYEAFKADIPKYSVVFYTTILEKAPAAKNLFSFL--ANGVDATNPKLTGHAEKLFGLVRDSAAQLRASGGVVADAA----LGAVHSQKAVNDAQFVVVKEALVKTLKE 116          
The following BLAST results are available for this feature:
BLAST of CX308817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LGB1_PEA6.330e-1743.70Leghemoglobin-1 OS=Pisum sativum PE=1 SV=2[more]
LGB2_PHAVU2.036e-1541.67Leghemoglobin OS=Phaseolus vulgaris PE=2 SV=3[more]
LGB2_VICFA2.251e-1440.83Leghemoglobin 29 OS=Vicia faba GN=LB29 PE=2 SV=1[more]
LGB_PSOTE6.551e-1440.34Leghemoglobin OS=Psophocarpus tetragonolobus PE=2 ... [more]
LGB2_SOYBN6.551e-1440.00Leghemoglobin C2 OS=Glycine max PE=1 SV=2[more]
LGBA_SOYBN8.555e-1440.34Leghemoglobin A OS=Glycine max GN=LBA PE=1 SV=2[more]
LGB3_SOYBN8.555e-1439.17Leghemoglobin C3 OS=Glycine max GN=LGB1 PE=2 SV=2[more]
LGB1_SOYBN5.545e-1340.00Leghemoglobin C1 OS=Glycine max PE=2 SV=2[more]
LGB1_VIGUN1.613e-1239.17Leghemoglobin-1 OS=Vigna unguiculata GN=LBI PE=2 S... [more]
LGB2_VIGUN1.784e-1137.50Leghemoglobin-2 OS=Vigna unguiculata GN=LBII PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC21004B10Rv AbsLeaSub1 Citrus clementina cDNA clone C21004B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308817 ID=CX308817; Name=CX308817; organism=Citrus clementina; type=EST; length=447bp
GCGGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCA
AATAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAG
CAAGAAGCTTTAGTTGTCAAGTCATGGAATGTAATGAAGAAGAATGCTGG
AGAATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAG
CCCAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAG
AACCAGAAGCTCAAGACCCATGCCATGTCTGTTTTTGTTATGACGTGTGA
ATCAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAA
CTCTAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAG
CATTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAGAGGC
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