CX308889

Overview
NameCX308889
Unique NameCX308889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMC_SOLTU (Phosphoglucomutase, cytoplasmic OS=Solanum tuberosum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.644e-23
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV+  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+++AL +SK++++T R  PTVIT
Sbjct:  503 GSVSKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDSSKIGRDSQEALAPLVEVALKLSKMQEYTSRSAPTVIT 583          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMC_POPTN (Phosphoglucomutase, cytoplasmic OS=Populus tremula GN=PGM1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.644e-23
Identity = 48/81 (59.26%), Postives = 65/81 (80.25%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GS++  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+ +AL + K+++FTGR  PTVIT
Sbjct:  502 GSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQDALAPLVAVALGLXKMQEFTGRSAPTVIT 582          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM1_MACFA (Phosphoglucomutase-1 OS=Macaca fascicularis GN=PGM1 PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 6.644e-23
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GS++  QG+R +FTDGSRIIFRLSGTGSAGAT+R+YI+ +E DV+K   D Q  L PLI +AL VS+L++ TGR  PTVIT
Sbjct:  482 GSISRNQGLRLIFTDGSRIIFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRSAPTVIT 562          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM1_HUMAN (Phosphoglucomutase-1 OS=Homo sapiens GN=PGM1 PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 1.133e-22
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GS++  QG+R +FTDGSRI+FRLSGTGSAGAT+R+YI+ +E DV+K   D Q  L PLI +AL VS+L++ TGR  PTVIT
Sbjct:  482 GSISRNQGLRLIFTDGSRIVFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMC_PEA (Phosphoglucomutase, cytoplasmic OS=Pisum sativum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.525e-22
Identity = 49/81 (60.49%), Postives = 64/81 (79.01%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GS++S QG+R++F DGSR+IFRLSGTGS GAT+R+YIEQ+E D SK    +  AL PL++ AL +SK+ +FTGR  PTVIT
Sbjct:  502 GSISSHQGIRYLFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDPSKIGRLSHEALAPLVEAALKLSKMEEFTGRSAPTVIT 582          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM1_MOUSE (Phosphoglucomutase-1 OS=Mus musculus GN=Pgm1 PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 2.525e-22
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GS++  QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E DV+K   D Q  L PLI +AL VS+L++ TGR  PTVIT
Sbjct:  482 GSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM1_RAT (Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.346e-22
Identity = 49/81 (60.49%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GS++  QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E D +K   D Q  L PLI +AL VS+L++ TGR  PTVIT
Sbjct:  482 GSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDAAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM1_RABIT (Phosphoglucomutase-1 OS=Oryctolagus cuniculus GN=PGM1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.253e-21
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV+  QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E D +K   D Q  L PLI +AL VS+L++ TGR  PTVIT
Sbjct:  482 GSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM1_BOVIN (Phosphoglucomutase-1 OS=Bos taurus GN=PGM1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.137e-21
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GS++  QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E D++K   D Q  L PLI +AL VS+L++ TGR  PTVIT
Sbjct:  482 GSISRNQGLRLLFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIALKVSQLQEKTGRTAPTVIT 562          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM2_PARTE (Phosphoglucomutase-2 OS=Paramecium tetraurelia GN=pp63-2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.980e-20
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  179 SVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 418
            SV+  QGVRFVF DGSRIIFRLSGTGS GAT+RIY EQFE    +HE    +AL  +I L L +S +  FTGR +PTVIT
Sbjct:  495 SVSKNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQEIQHE--TATALANIIKLGLEISDIAQFTGRNEPTVIT 572          
The following BLAST results are available for this feature:
BLAST of CX308889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PGMC_SOLTU6.644e-2359.26Phosphoglucomutase, cytoplasmic OS=Solanum tuberos... [more]
PGMC_POPTN6.644e-2359.26Phosphoglucomutase, cytoplasmic OS=Populus tremula... [more]
PGM1_MACFA6.644e-2362.96Phosphoglucomutase-1 OS=Macaca fascicularis GN=PGM... [more]
PGM1_HUMAN1.133e-2261.73Phosphoglucomutase-1 OS=Homo sapiens GN=PGM1 PE=1 ... [more]
PGMC_PEA2.525e-2260.49Phosphoglucomutase, cytoplasmic OS=Pisum sativum G... [more]
PGM1_MOUSE2.525e-2261.73Phosphoglucomutase-1 OS=Mus musculus GN=Pgm1 PE=1 ... [more]
PGM1_RAT7.346e-2260.49Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 ... [more]
PGM1_RABIT1.253e-2161.73Phosphoglucomutase-1 OS=Oryctolagus cuniculus GN=P... [more]
PGM1_BOVIN2.137e-2160.49Phosphoglucomutase-1 OS=Bos taurus GN=PGM1 PE=2 SV... [more]
PGM2_PARTE8.980e-2062.50Phosphoglucomutase-2 OS=Paramecium tetraurelia GN=... [more]

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Properties
Property NameValue
Genbank descriptionC21005B11Rv AbsLeaSub1 Citrus clementina cDNA clone C21005B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308889 ID=CX308889; Name=CX308889; organism=Citrus clementina; type=EST; length=426bp
TTCATTTGCATTCCATGGACTTATTTATGGTCCCATGATGCCAAATTTCC
TAACCAAACCTTAACAGGAAATATTTATGATAACTCAACTCCAGCATGAA
AAGTTGGTATGCCCATCTCTCAGCTCCAACTTAAAATAACACCTGATACA
TAGAGACTAATAACGGGAGAGCTCTTTATGTGATAACTGTAGGTTTCTCC
CTTCCAGTGAAGTCCCTCAACTTTGAAACAGATAATGCCAGATCTATTAA
CGGTTTCAAGGCTGATTGTGCATCCATTTCATGTTTAGAGACATCTGGCT
CAAACTGTTCAATGTAAATTCGAACAGTTGCACCTGCTGAACCAGTTCCT
GATAAACGAAATATTATCCTTGATCCGTCTGTGAAAACAAACCGAACACC
TTGCTTTGATGCCACACTTCCGCCCG
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