CX308889

Overview
NameCX308889
Unique NameCX308889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM1_PARTE (Phosphoglucomutase-1 OS=Paramecium tetraurelia GN=pp63-1 PE=1 SV=4)

HSP 1 Score: 95.5153 bits (236), Expect = 8.980e-20
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  179 SVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 418
            SV+  QGVRFVF DGSRIIFRLSGTGS GAT+RIY EQFE    +HE    +AL  +I L L +S +  FTGR +PTVIT
Sbjct:  495 SVSKNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQQIQHE--TATALANIIKLGLEISDIAQFTGRNEPTVIT 572          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM_ENTHI (Phosphoglucomutase OS=Entamoeba histolytica GN=pgm PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.532e-19
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV SKQG+RFVF DGSRIIFRLSGTGS GAT+R+Y +++  D   ++ D    L  ++ +A +VS++  FTGREKP+V+T
Sbjct:  476 GSVTSKQGIRFVFEDGSRIIFRLSGTGSVGATIRVYFDKYSKD---YKADQTKVLADMVTVAYAVSQITKFTGREKPSVVT 553          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM_ENTDI (Phosphoglucomutase OS=Entamoeba dispar GN=pgm PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.532e-19
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV SKQG+RFVF DGSRIIFRLSGTGS GAT+R+Y +++  D   ++ D    L  ++ +A +VS++  FTGREKP+V+T
Sbjct:  476 GSVTSKQGIRFVFEDGSRIIFRLSGTGSVGATIRVYFDKYSKD---YKADQNKMLADMVTVAYAVSQITKFTGREKPSVVT 553          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM_DROSI (Phosphoglucomutase OS=Drosophila simulans GN=Pgm PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.457e-19
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = -3
Query:  179 SVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 418
            SVA+KQG+R VF DGSRI+ RLSGTGS+GATVR+YI+ +E +    +  A   LKPLID+AL +S+L  FTGR  PTVIT
Sbjct:  483 SVATKQGLRIVFEDGSRIVVRLSGTGSSGATVRLYIDSYEKENVLGQ--ASVMLKPLIDIALEISQLPKFTGRNAPTVIT 560          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM_DROME (Phosphoglucomutase OS=Drosophila melanogaster GN=Pgm PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.457e-19
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = -3
Query:  179 SVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 418
            SVA+KQG+R VF DGSRI+ RLSGTGS+GATVR+YI+ +E +    +  A   LKPLID+AL +S+L  FTGR  PTVIT
Sbjct:  483 SVATKQGLRIVFEDGSRIVVRLSGTGSSGATVRLYIDSYEKENVLGQ--ASVMLKPLIDIALEISQLPKFTGRNAPTVIT 560          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM1_DICDI (Phosphoglucomutase-1 OS=Dictyostelium discoideum GN=pgmA PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.297e-18
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = -3
Query:  179 SVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLAL-SVSKLRDFTGREKPTVIT 418
            SV+S QG+R +FTDGSRII+RLSGTGS GATVR+Y +++E   ++   D Q+ LK LI +AL  +SKL  +TGR +P VIT
Sbjct:  492 SVSSHQGLRIIFTDGSRIIYRLSGTGSTGATVRVYFDKYETQPTQLNNDVQTHLKSLIHIALVEISKLNHYTGRNEPNVIT 572          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM_SCHPO (Probable phosphoglucomutase OS=Schizosaccharomyces pombe GN=SPBC32F12.10 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GS +  QG+   F +GSRI+ RLSGTGS+GAT+R+Y+E+ E D SK ++DAQ ALKP++  AL +  L + TGR++PTVIT
Sbjct:  474 GSESKHQGLYIKFENGSRIVTRLSGTGSSGATLRLYMEKHESDSSKFDLDAQVALKPVVHAALEILALEELTGRKEPTVIT 554          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM_RHIRD (Phosphoglucomutase OS=Rhizobium radiobacter GN=pgm PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.405e-18
Identity = 40/80 (50.00%), Postives = 61/80 (76.25%), Query Frame = -3
Query:  179 SVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 418
            SV+  QG+R +F  GSRI+ RLSGTG+AGAT+R+Y+E++EPD ++H ++ QSAL  LI +A +++ ++  T   +PTVIT
Sbjct:  463 SVSKNQGIRILFEGGSRIVLRLSGTGTAGATLRLYVERYEPDAARHGIETQSALADLISVADTIAGIKAHTADSEPTVIT 542          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM_EMENI (Phosphoglucomutase OS=Emericella nidulans GN=pgmB PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.098e-17
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV   QG+   F DGSR++ RLSGTGS+GAT+R+Y+E++E D SK++M  Q  LK  + LAL + K ++F GRE+P V T
Sbjct:  476 GSVTKNQGLYVKFDDGSRLVVRLSGTGSSGATIRLYVEKYEGDKSKYQMATQDYLKDNVGLALELLKFKEFVGREEPDVKT 556          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM5_MOUSE (Phosphoglucomutase-like protein 5 OS=Mus musculus GN=Pgm5 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.872e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            G+V  KQG+R +F+D SR+IFRLS +    AT+R+Y E +E D S H+ + Q+ L PLI +AL +S++ + TGR  PTVIT
Sbjct:  487 GTVTKKQGLRIIFSDASRLIFRLSSSSGVRATIRLYAESYERDPSGHDQEPQAVLSPLIAIALKISQIHERTGRRGPTVIT 567          
The following BLAST results are available for this feature:
BLAST of CX308889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PGM1_PARTE8.980e-2062.50Phosphoglucomutase-1 OS=Paramecium tetraurelia GN=... [more]
PGM_ENTHI1.532e-1955.56Phosphoglucomutase OS=Entamoeba histolytica GN=pgm... [more]
PGM_ENTDI1.532e-1955.56Phosphoglucomutase OS=Entamoeba dispar GN=pgm PE=2... [more]
PGM_DROSI4.457e-1961.25Phosphoglucomutase OS=Drosophila simulans GN=Pgm P... [more]
PGM_DROME4.457e-1961.25Phosphoglucomutase OS=Drosophila melanogaster GN=P... [more]
PGM1_DICDI1.297e-1856.79Phosphoglucomutase-1 OS=Dictyostelium discoideum G... [more]
PGM_SCHPO1.694e-1854.32Probable phosphoglucomutase OS=Schizosaccharomyces... [more]
PGM_RHIRD8.405e-1850.00Phosphoglucomutase OS=Rhizobium radiobacter GN=pgm... [more]
PGM_EMENI1.098e-1751.85Phosphoglucomutase OS=Emericella nidulans GN=pgmB ... [more]
PGM5_MOUSE1.872e-1749.38Phosphoglucomutase-like protein 5 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC21005B11Rv AbsLeaSub1 Citrus clementina cDNA clone C21005B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308889 ID=CX308889; Name=CX308889; organism=Citrus clementina; type=EST; length=426bp
TTCATTTGCATTCCATGGACTTATTTATGGTCCCATGATGCCAAATTTCC
TAACCAAACCTTAACAGGAAATATTTATGATAACTCAACTCCAGCATGAA
AAGTTGGTATGCCCATCTCTCAGCTCCAACTTAAAATAACACCTGATACA
TAGAGACTAATAACGGGAGAGCTCTTTATGTGATAACTGTAGGTTTCTCC
CTTCCAGTGAAGTCCCTCAACTTTGAAACAGATAATGCCAGATCTATTAA
CGGTTTCAAGGCTGATTGTGCATCCATTTCATGTTTAGAGACATCTGGCT
CAAACTGTTCAATGTAAATTCGAACAGTTGCACCTGCTGAACCAGTTCCT
GATAAACGAAATATTATCCTTGATCCGTCTGTGAAAACAAACCGAACACC
TTGCTTTGATGCCACACTTCCGCCCG
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