CX308889

Overview
NameCX308889
Unique NameCX308889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM5_HUMAN (Phosphoglucomutase-like protein 5 OS=Homo sapiens GN=PGM5 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.194e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            G+V  KQG+R +F+D SR+IFRLS +    AT+R+Y E +E D S H+ + Q+ L PLI +AL +S++ + TGR  PTVIT
Sbjct:  487 GTVTKKQGLRIIFSDASRLIFRLSSSSGVRATLRLYAESYERDPSGHDQEPQAVLSPLIAIALKISQIHERTGRRGPTVIT 567          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM_ASPFU (Phosphoglucomutase OS=Aspergillus fumigatus GN=pgmA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.115e-17
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV   QG+   F DGSR++ RLSGTGS+GAT+R+YIE++E D SK  M+ Q  LK  + LA+S+ K +++ GRE P V T
Sbjct:  475 GSVTKNQGLYVKFDDGSRLVVRLSGTGSSGATIRLYIEKYESDKSKFGMNTQDYLKDNVALAMSLLKFKEYIGREDPDVKT 555          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM_ASPOR (Phosphoglucomutase OS=Aspergillus oryzae GN=pgmA PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.293e-17
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV+  QG+   F DGSRII RLSGTGS+GAT+R+YIE++E D SK  + A   LK  + LALS+   ++F GRE+P V T
Sbjct:  475 GSVSKNQGLYAKFDDGSRIIVRLSGTGSSGATIRLYIEKYESDKSKFGLTASEYLKDNVALALSLLNFKEFIGREEPDVRT 555          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM2_YEAST (Phosphoglucomutase-2 OS=Saccharomyces cerevisiae GN=PGM2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.233e-13
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV+  QG+    ++G+R + RLSGTGS+GAT+R+YIE++  D S+++  A+  LKP+I+  +     +   G E+PTV T
Sbjct:  489 GSVSDHQGLYVKLSNGARFVLRLSGTGSSGATIRLYIEKYCDDKSQYQKTAEEYLKPIINSVIKFLNFKQVLGTEEPTVRT 569          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGM1_YEAST (Phosphoglucomutase-1 OS=Saccharomyces cerevisiae GN=PGM1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.467e-11
Identity = 29/81 (35.80%), Postives = 52/81 (64.20%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GS++  QG+   F++G++ + RLSGTGS+GAT+R+Y+E++      +   A   LKP+I+  +   + ++  G ++PTV T
Sbjct:  490 GSISENQGLFVKFSNGTKFVLRLSGTGSSGATIRLYVEKYTDKKENYGQTADVFLKPVINSIVKFLRFKEILGTDEPTVRT 570          
The following BLAST results are available for this feature:
BLAST of CX308889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PGM5_HUMAN3.194e-1749.38Phosphoglucomutase-like protein 5 OS=Homo sapiens ... [more]
PGM_ASPFU7.115e-1751.85Phosphoglucomutase OS=Aspergillus fumigatus GN=pgm... [more]
PGM_ASPOR9.293e-1754.32Phosphoglucomutase OS=Aspergillus oryzae GN=pgmA P... [more]
PGM2_YEAST6.233e-1341.98Phosphoglucomutase-2 OS=Saccharomyces cerevisiae G... [more]
PGM1_YEAST4.467e-1135.80Phosphoglucomutase-1 OS=Saccharomyces cerevisiae G... [more]

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Properties
Property NameValue
Genbank descriptionC21005B11Rv AbsLeaSub1 Citrus clementina cDNA clone C21005B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308889 ID=CX308889; Name=CX308889; organism=Citrus clementina; type=EST; length=426bp
TTCATTTGCATTCCATGGACTTATTTATGGTCCCATGATGCCAAATTTCC
TAACCAAACCTTAACAGGAAATATTTATGATAACTCAACTCCAGCATGAA
AAGTTGGTATGCCCATCTCTCAGCTCCAACTTAAAATAACACCTGATACA
TAGAGACTAATAACGGGAGAGCTCTTTATGTGATAACTGTAGGTTTCTCC
CTTCCAGTGAAGTCCCTCAACTTTGAAACAGATAATGCCAGATCTATTAA
CGGTTTCAAGGCTGATTGTGCATCCATTTCATGTTTAGAGACATCTGGCT
CAAACTGTTCAATGTAAATTCGAACAGTTGCACCTGCTGAACCAGTTCCT
GATAAACGAAATATTATCCTTGATCCGTCTGTGAAAACAAACCGAACACC
TTGCTTTGATGCCACACTTCCGCCCG
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