CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:175..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
[Close]
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
[Close]
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
[Close]
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
[Close]
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
[Close]
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
[Close]
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
[Close]
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
[Close]
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
[Close]
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
RB11B_MOUSE6.864e-2886.36Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN6.864e-2886.36Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_DISOM6.864e-2886.36Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_BOVIN6.864e-2886.36Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11A_RAT6.864e-2886.36Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT6.864e-2886.36Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB6.864e-2886.36Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG6.864e-2886.36Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE6.864e-2886.36Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN6.864e-2886.36Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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