CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:175..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.624e-11
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  116 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            K+++IG+SGVGKS+L+ RF  + F+ E  +TIGV+F   S+ ID   VK  IWDTAGQ
Sbjct:   13 KILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMTIDGNRVKLAIWDTAGQ 70          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.624e-11
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 2
Query:   86 KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +P    D+  ++++IG  GVGK++L+ RFT + F    KST+GV+F  +++ +  K ++ QIWDTAGQ
Sbjct:   33 QPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 100          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB12_HUMAN (Putative Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=5 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.624e-11
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 2
Query:   86 KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +P    D+  ++++IG  GVGK++L+ RFT + F    KST+GV+F  +++ +  K ++ QIWDTAGQ
Sbjct:   34 QPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 101          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 25/60 (41.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ ++ ++++   QIWDTAGQ
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB7_PEA (Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 25/60 (41.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ ++ ++++   QIWDTAGQ
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB7_CENCI (Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 25/60 (41.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ ++ ++++   QIWDTAGQ
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB7L_PONAB (Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 28/63 (44.44%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  104 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLR-IDNKVVKAQIWDTAGQ 289
            D+LFK++++GD+ VGK++L+ R++++ F+   KST+GV+FA + L+  D ++V+ Q+WD AGQ
Sbjct:    5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB7L_HUMAN (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 28/63 (44.44%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  104 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLR-IDNKVVKAQIWDTAGQ 289
            D+LFK++++GD+ VGK++L+ R++++ F+   KST+GV+FA + L+  D ++V+ Q+WD AGQ
Sbjct:    5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQ 67          
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
RAB18_CAEBR7.624e-1153.45Ras-related protein Rab-18 OS=Caenorhabditis brigg... [more]
RAB12_MOUSE7.624e-1141.18Ras-related protein Rab-12 OS=Mus musculus GN=Rab1... [more]
RAB12_HUMAN7.624e-1141.18Putative Ras-related protein Rab-12 OS=Homo sapien... [more]
RAB7_PRUAR9.957e-1141.67Ras-related protein Rab7 OS=Prunus armeniaca PE=2 ... [more]
RAB7_PEA9.957e-1141.67Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=... [more]
RAB7_CENCI9.957e-1141.67Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2... [more]
RAB7L_PONAB9.957e-1144.44Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB... [more]
RAB7L_HUMAN9.957e-1144.44Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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