CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:175..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 4.164e-25
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +YD LFK+VLIGDSGVGKSNLLSRFTKNEFN++SKSTIGVEFATR+L ID K +KAQIWDTAGQ
Sbjct:    9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQ 72          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.438e-25
Identity = 51/65 (78.46%), Postives = 62/65 (95.38%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EEYDYL+K+VLIGDSGVGKSNLLSRFT+NEF+LE+KSTIGVEFATR+++ + K +KAQ+WDTAGQ
Sbjct:    8 EEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQ 72          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 7.103e-25
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 2
Query:   80 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            G + D EY YLFK+VLIGDSGVGKSN+LSRFT+N F+L+SKSTIGVEFAT+SL+++ K +KAQIWDTAGQ
Sbjct:    2 GGRVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQ 71          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.254e-21
Identity = 46/64 (71.88%), Postives = 58/64 (90.62%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYL K+V+IGDSGVGKSNLLSR+ KNEF++   STIGVEF+T++L+IDNK++K Q+WDTAGQ
Sbjct:    7 EYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQ 70          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.793e-21
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            ++ DY+FK+VLIGDS VGKS LL+RF +NEFNL+SK+TIGVEF TR+L ID + VKAQIWDTAGQ
Sbjct:   13 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQ 77          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.222e-21
Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 2
Query:  104 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            DY+FK+VLIGDS VGKS +L+RF +NEF+L+SKSTIGVEF TR+L ID+K VKAQIWDTAGQ
Sbjct:   15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQ 76          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.061e-20
Identity = 44/66 (66.67%), Postives = 57/66 (86.36%), Query Frame = 2
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +EE +YLFK+V+IGDS VGKSNLL+RFT+NEF  ++K+TIGV+F T+S+ IDNK + AQ WDTAGQ
Sbjct:    4 EEEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQ 69          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.061e-20
Identity = 44/69 (63.77%), Postives = 61/69 (88.41%), Query Frame = 2
Query:   80 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 286
            G + DE+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ +    VKAQIWDTAG
Sbjct:    2 GNRTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 70          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.033e-20
Identity = 45/65 (69.23%), Postives = 57/65 (87.69%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            ++ DY+FK+VLIGDS VGKS +L+RF +NEF+L+SK+TIGVEF TR+L I +K VKAQIWDTAGQ
Sbjct:   10 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQ 74          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.033e-20
Identity = 42/69 (60.87%), Postives = 61/69 (88.41%), Query Frame = 2
Query:   80 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 286
            G + +E+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ +    +KAQIWDTAG
Sbjct:    2 GNRAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAG 70          
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
YPT31_YEAST4.164e-2584.38GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11A_DICDI5.438e-2578.46Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RGP2_ORYSJ7.103e-2574.29Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB11B_DICDI1.254e-2171.88Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RGP1_ORYSJ2.793e-2172.31Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_LOTJA6.222e-2175.81Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11C_DICDI1.061e-2066.67Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB25_MOUSE1.061e-2063.77Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RB11D_TOBAC4.033e-2069.23Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RAB25_BOVIN4.033e-2060.87Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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