CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:175..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.880e-20
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 2
Query:  104 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +YLFK+V+IGDS VGKSNLL+R+ +NEFN  SK+TIGVEF T+S+ ID K VKAQIWDTAGQ
Sbjct:   10 EYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQ 71          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.985e-20
Identity = 43/69 (62.32%), Postives = 60/69 (86.96%), Query Frame = 2
Query:   80 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 286
            G   +E+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ +    VKAQIWDTAG
Sbjct:    2 GNGTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 70          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.173e-19
Identity = 43/69 (62.32%), Postives = 60/69 (86.96%), Query Frame = 2
Query:   80 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 286
            G   +E+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ +    VKAQIWDTAG
Sbjct:    2 GNGKEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAG 70          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.533e-19
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            ++ DY+FK+VLIGDS VGK+ +L+RF +NEF+L+SK+TIGVEF TR+L I +K VKAQIWDTAGQ
Sbjct:   10 QKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 74          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.533e-19
Identity = 44/62 (70.97%), Postives = 54/62 (87.10%), Query Frame = 2
Query:  104 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +YLFK+V+IGDS VGKSNLLSR+ +NEF+  SK+TIGVEF T+S+ I+ K VKAQIWDTAGQ
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQ 71          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.119e-17
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +EYDYLFK+++IGDSG GKS+LL RF  N ++    STIGV+F  ++++IDN  +K QIWDTAGQ
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQ 66          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.119e-17
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +EYDYLFK+++IGDSG GKS+LL RF  N ++    STIGV+F  ++++IDN  +K QIWDTAGQ
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQ 66          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.586e-16
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D KV+K QIWDTAGQ
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.586e-16
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D KV+K QIWDTAGQ
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.586e-16
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K++K QIWDTAGQ
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQ 67          
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
ARA4_ARATH6.880e-2072.58Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RAB25_HUMAN8.985e-2062.32Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_RABIT1.173e-1962.32Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RB11C_TOBAC1.533e-1967.69Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
ARA1_ARATH1.533e-1970.97Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RAB1_THEPA7.119e-1758.46Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB1_THEAN7.119e-1758.46Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
YPTV1_VOLCA1.586e-1664.06GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
YPTC1_CHLRE1.586e-1664.06GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB1B_DICDI1.586e-1662.50Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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