CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:175..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.533e-16
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQ
Sbjct:    7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.615e-16
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            Y+Y+FK ++IGD GVGKS LL +FT+N+F  +S  TIGVEF TR + ++NK +K QIWDTAGQ
Sbjct:    5 YEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.027e-16
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   74 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            M+   PD  YDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQ
Sbjct:    1 MSTMNPD--YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.871e-16
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.871e-16
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.871e-16
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.871e-16
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.871e-16
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.871e-16
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.871e-16
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67          
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
RAB1A_CANFA3.533e-1662.50Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB14_DICDI4.615e-1660.32Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RAB1A_LYMST6.027e-1658.33Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB8A_RAT7.871e-1660.32Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_PONAB7.871e-1660.32Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MOUSE7.871e-1660.32Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA7.871e-1660.32Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN7.871e-1660.32Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA7.871e-1660.32Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN7.871e-1660.32Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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