CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:175..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.028e-15
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 2
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            + EYDYLFKL+LIG+SGVGKS LL RF+ + +  +  STIGV+F  +++ +D K VK QIWDTAGQ
Sbjct:    2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.028e-15
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+  L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.028e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 2
Query:   89 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            PDE+YD+LFKLVL+GD+ VGK+ ++ RF    F+    STIGV+F  ++L I  K VK QIWDTAGQ
Sbjct:   11 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 77          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.343e-15
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R+  ++ K VK QIWDTAGQ
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.290e-15
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYLFKL+LIGDSGVGKS LL RF+ + +     STIGV+F  R++  D K +K QIWDTAGQ
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.290e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            ++YD LF+L+LIGDSGVGK+ LL RFT NEF+    STIGV+F  +++ +D   V+ QIWDTAGQ
Sbjct:    3 KQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.290e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            ++YD LF+L+LIGDSGVGK+ LL RFT NEF+    STIGV+F  +++ +D   V+ QIWDTAGQ
Sbjct:    3 KQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.290e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            ++YD LF+L+LIGDSGVGK+ LL RFT NEF+    STIGV+F  +++ +D   V+ QIWDTAGQ
Sbjct:    3 KQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.991e-15
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++  D K +K QIWDTAGQ
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.991e-15
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 2
Query:   74 MAGYKP---DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            MAG  P   DE YD+LFKLVL+GD+ VGK+ ++ RF    F+    STIGV+F  ++L I  K VK QIWDTAGQ
Sbjct:    1 MAGPGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 75          
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
YPT1_YEAST1.028e-1559.09GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB8A_CHICK1.028e-1560.32Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB43_HUMAN1.028e-1556.72Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
YPT1_SCHPO1.343e-1562.50GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RBD2A_ARATH2.290e-1562.50Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB15_RAT2.290e-1558.46Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_HUMAN2.290e-1558.46Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RAB15_BOVIN2.290e-1558.46Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]
RIC1_ORYSJ2.991e-1562.50Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB43_RAT2.991e-1554.67Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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