CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:175..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.991e-15
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 2
Query:   74 MAGYKP---DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            MAG  P   DE YD+LFKLVL+GD+ VGK+ ++ RF    F+    STIGV+F  ++L I  K VK QIWDTAGQ
Sbjct:    1 MAGPGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 75          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.907e-15
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++  D K +K QIWDTAGQ
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.907e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            ++YD LF+L+LIGDSGVGK+ LL RFT NEF+    STIGV+F  +++ +D   V+ QIWDTAGQ
Sbjct:    3 KQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.102e-15
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            + YDYL KL+LIGDSGVGKS LL RF+++ F     +TIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    4 KSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 68          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.102e-15
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +YDYL KL+LIGDSGVGKS LL RF+   F     +TIG++F  R++ +D K +K QIWDTAGQ
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.102e-15
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +YD+LFKL++IGDSGVGKS+LL RF  N F+    +TIGV+F  R++ I+ + VK QIWDTAGQ
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.102e-15
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +YD+LFKL++IGDSGVGKS+LL RF  N F+    +TIGV+F  R++ I+ + VK QIWDTAGQ
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.102e-15
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +YD+LFKL++IGDSGVGKS+LL RF  N F+    +TIGV+F  R++ I+ + VK QIWDTAGQ
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.102e-15
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +YDYL KL+LIGDSGVGKS LL RF+   F     +TIG++F  R++ +D K +K QIWDTAGQ
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.664e-15
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 2
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            DE +DYLFK++LIGDS VGK+ ++  F    +    ++TIGV+F  RSL ID K VK Q+WDTAGQ
Sbjct:   11 DENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQ 76          
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
RAB43_MOUSE2.991e-1554.67Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
YPTM2_MAIZE3.907e-1562.50GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB15_MOUSE3.907e-1558.46Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]
YPT2_SCHPO5.102e-1556.92GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RB1BV_BETVU5.102e-1557.81Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB35_RAT5.102e-1559.38Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE5.102e-1559.38Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN5.102e-1559.38Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
ARA3_ARATH5.102e-1557.81Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB19_HUMAN6.664e-1554.55Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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