CX308963

Overview
NameCX308963
Unique NameCX308963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308963_ssr353 microsatellite CX308963_ssr353:353..367. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11238 contig Ccv1_Contig11238:419..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.202e-17
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++   RW+L+AK   LK R GK CR RW N+L P+VK+ + T +E   I E H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct:  102 VQKYGPKRWSLIAKH--LKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.678e-17
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++   RW+L+AK   LK R GK CR RW N+L P+VK+ + T  E   I E H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct:  102 VQKYGPKRWSLIAKH--LKGRIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.965e-17
Identity = 39/88 (44.32%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++   +W+++AK   LK R GK CR RW N+L PDVK+ + T +E   I   H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct:  101 VHKYGPKKWSIIAKH--LKGRIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRK 186          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.017e-16
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++   +W L+AK   LK R GK CR RW N+L P+VK+ + T +E   I E H   GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct:   98 VKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.329e-16
Identity = 39/88 (44.32%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++   RW+++AK   LK R GK CR RW N+L P+VK+ + T +E   I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct:  107 VQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.329e-16
Identity = 39/88 (44.32%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++   RW+++AK   LK R GK CR RW N+L P+VK+ + T +E   I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct:  107 VQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++   +W L+AK   LK R GK CR RW N+L P+VK+   T +E   I E H   GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct:   98 VKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++   +W L+AK   LK R GK CR RW N+L P+VK+   T +E   I E H   GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct:   98 VKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.050e-16
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSG--LKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 276
            + ++    W+L+++R    L R  KSC  RW NYL+P +K+G+LT +EQ  ++ L +K GN+W KIA  +PGRT   +  +W    +KQ R L+
Sbjct:   19 VRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELR 112          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.050e-16
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++    W L+AK+    R GK CR RW N+L P+VK+ + T +E   I + H   GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct:   98 VKKYGTKHWTLIAKQLR-GRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183          
The following BLAST results are available for this feature:
BLAST of CX308963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYBA_HUMAN1.202e-1746.59Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYBA_CHICK2.678e-1746.59Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MYBA_XENLA5.965e-1744.32Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYBB_CHICK1.017e-1644.32Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYB_MOUSE1.329e-1644.32Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_CHICK1.329e-1644.32Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYBB_MOUSE2.960e-1644.32Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBB_HUMAN2.960e-1644.32Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
RS2_MAIZE5.050e-1639.36Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
MYBB_XENLA5.050e-1641.38Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]

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Properties
Property NameValue
Genbank descriptionC21006F01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308963 ID=CX308963; Name=CX308963; organism=Citrus clementina; type=EST; length=604bp
ATATCTCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGG
CTTGAAGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGA
AACCTGATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATT
CTTGAACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCA
CTTACCAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTG
TTCAGAAGCAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTT
CAAGAGATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGA
CACATCATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAATTA
ATTCTCAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCA
CAAATAATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCA
AGAATTGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTT
CCTGCATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGTTT
TCGG
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