CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:21..345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK1_PEA (Nucleoside diphosphate kinase 1 OS=Pisum sativum GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.297e-22
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            EQTFIMIKPDGVQRGLVGEII RFEKKGF LKGLK + V+R FAEKHY DLS+KPFF  L+
Sbjct:    3 EQTFIMIKPDGVQRGLVGEIISRFEKKGFYLKGLKFVNVERAFAEKHYADLSAKPFFSGLV 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK1_SACOF (Nucleoside diphosphate kinase 1 OS=Saccharum officinarum GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.245e-21
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME TFIMIKPDGVQRGL+GEII RFEKKGF LK LKL+ V+R FAEKHY DLSSKPFF  L+
Sbjct:    1 MESTFIMIKPDGVQRGLIGEIISRFEKKGFYLKALKLVNVERSFAEKHYADLSSKPFFQGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSJ (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. japonica GN=NDKR PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.066e-20
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQ+FIMIKPDGVQRGL+G+II RFEKKGF L+G+K M V+R FA++HY DLS KPFF  L+
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSI (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. indica GN=NDKR PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.066e-20
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQ+FIMIKPDGVQRGL+G+II RFEKKGF L+G+K M V+R FA++HY DLS KPFF  L+
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFFLRGMKFMNVERSFAQQHYADLSDKPFFPGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.521e-19
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1
Query:  127 NLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +++E+E+T+IMIKPDGVQRGLVGEII RFEKKGF L GLKL    +  AE+HY+DL SKPFF  LI
Sbjct:   80 SMEEVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLI 145          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_CYAA5 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain ATCC 51142) GN=ndk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.682e-18
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TFIMIKPDGVQRGLVGE+I RFE KGF+L GLKLM+V +  AE+HY+    +PFFGSL+
Sbjct:    1 MERTFIMIKPDGVQRGLVGEVIGRFEAKGFTLVGLKLMSVSKELAEEHYDVHKERPFFGSLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SYNY3 (Nucleoside diphosphate kinase OS=Synechocystis sp. (strain PCC 6803) GN=ndk PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.747e-18
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TFIMIKPDGVQR L+GEI+ RFEKKGF L  +K+MTV +  AEKHYE L+ KPFF  L+
Sbjct:    1 MERTFIMIKPDGVQRQLIGEIVGRFEKKGFKLVAMKVMTVSQELAEKHYEALNDKPFFSGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.392e-18
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 1
Query:  127 NLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +++++E+T+IM+KPDG+QRGLVGEII RFEKKGF L GLK+    +  AE+HY+DLS+K FF +LI
Sbjct:   79 SMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLI 144          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_TRIEI (Nucleoside diphosphate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=ndk PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.348e-18
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TFI IKPDGVQRGLVG+II RFE KGF+L GLK+MTV +  AEKHY+    +PFF SLI
Sbjct:    1 MERTFIAIKPDGVQRGLVGQIISRFETKGFTLVGLKIMTVTKELAEKHYDVHKERPFFSSLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_BREBN (Nucleoside diphosphate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ndk PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.348e-18
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+M+KPDGVQR L+GEI+ RFEKKG+ L G KLMTV R  AE+HY +   +PFFG L+
Sbjct:    1 MEKTFLMVKPDGVQRNLIGEIVSRFEKKGYQLVGAKLMTVSRELAEEHYAEHKERPFFGELV 62          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK1_PEA7.297e-2280.33Nucleoside diphosphate kinase 1 OS=Pisum sativum G... [more]
NDK1_SACOF1.245e-2179.03Nucleoside diphosphate kinase 1 OS=Saccharum offic... [more]
NDK1_ORYSJ3.066e-2070.97Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK1_ORYSI3.066e-2070.97Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK2_TOBAC1.521e-1968.18Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_CYAA51.682e-1869.35Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK_SYNY33.747e-1867.74Nucleoside diphosphate kinase OS=Synechocystis sp.... [more]
NDK2_ARATH6.392e-1860.61Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK_TRIEI8.348e-1869.35Nucleoside diphosphate kinase OS=Trichodesmium ery... [more]
NDK_BREBN8.348e-1862.90Nucleoside diphosphate kinase OS=Brevibacillus bre... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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