CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:21..345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_CARHZ (Nucleoside diphosphate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ndk PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.090e-17
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TFIM+KPDGVQRGLVGEII RFEK+GF L GLKLM + R  AE HY +   KPFF  L+
Sbjct:    1 MERTFIMVKPDGVQRGLVGEIISRFEKRGFKLVGLKLMQISRELAETHYGEHKGKPFFEGLL 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK4_ARATH (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.090e-17
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   67 ILSHVCCAISLNSQNKLVSLNLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 321
            +L+    A  L  Q  L +    EME+TFI IKPDGVQRGL+ EII RFE+KG+ L G+K+M   + FA+KHY DL  +PFF  L
Sbjct:   67 LLALPAAAFMLQDQEALAA----EMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNGL 147          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_DESAP (Nucleoside diphosphate kinase OS=Desulforudis audaxviator (strain MP104C) GN=ndk PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.424e-17
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            M++TF+M+KPDGVQRGLVGE+I RFE++GF L  LKL+ +DR  AE+HYE+   KPFF  L+
Sbjct:    1 MDRTFVMVKPDGVQRGLVGEVITRFERRGFKLVALKLLWIDRGLAERHYEEHRGKPFFDELV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK3_SPIOL (Nucleoside diphosphate kinase 3 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.860e-17
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  136 EMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E E+TFI IKPDGVQRGL+ EI+ RFE+KGFSL  +K++   RPFA+KHY DL  KPF+  L+
Sbjct:    2 EFERTFIAIKPDGVQRGLISEIVARFERKGFSLVAIKVVIPSRPFAQKHYADLKDKPFYVGLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SYNP2 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.172e-17
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+M+KPDGVQRGLVG++I RFE KGF L GLKL++V R  AE+HY     +PFFGSL+
Sbjct:    1 MERTFVMVKPDGVQRGLVGDVIRRFEAKGFKLVGLKLVSVSRELAEQHYGVHRERPFFGSLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_GEOKA (Nucleoside diphosphate kinase OS=Geobacillus kaustophilus GN=ndk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.172e-17
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFIM+KPDGVQR L+GEI+ RFEKKGF L G KLM V R  AE+HY +   +PFFG L+
Sbjct:    3 ERTFIMVKPDGVQRNLIGEIVARFEKKGFQLVGAKLMQVSRELAEQHYAEHKERPFFGELV 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK3_ARATH (Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.172e-17
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  136 EMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 321
            EME+TFI IKPDGVQRGL+ EII RFE+KGF L G+K++   + FA+KHY DL  +PFF  L
Sbjct:   87 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFNGL 148          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_HELMI (Nucleoside diphosphate kinase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=ndk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.143e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+T++MIKPDGVQRGLVGEII RFEKKGF L G+K + + R  AEKHY +   KPFF  L+
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIISRFEKKGFKLVGMKFLRLTREMAEKHYAEHVGKPFFAGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.143e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TFI IKPDGVQRGLVGEI+ RFE++GF L GLKLM V    A+KHY +   +PFFG L+
Sbjct:    1 MERTFIAIKPDGVQRGLVGEILQRFERRGFKLVGLKLMQVSEALAQKHYAEHKERPFFGGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.143e-17
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 1
Query:  127 NLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +++++E+T+IMIKPDGVQRGLVGEII RFEKKGF L GLK+    +  AE+HY+DL +K F+  LI
Sbjct:   81 SMEQVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLI 146          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK_CARHZ1.090e-1767.74Nucleoside diphosphate kinase OS=Carboxydothermus ... [more]
NDK4_ARATH1.090e-1751.76Nucleoside diphosphate kinase IV, chloroplastic/mi... [more]
NDK_DESAP1.424e-1761.29Nucleoside diphosphate kinase OS=Desulforudis auda... [more]
NDK3_SPIOL1.860e-1761.90Nucleoside diphosphate kinase 3 OS=Spinacia olerac... [more]
NDK_SYNP23.172e-1764.52Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_GEOKA3.172e-1763.93Nucleoside diphosphate kinase OS=Geobacillus kaust... [more]
NDK3_ARATH3.172e-1762.90Nucleoside diphosphate kinase III, chloroplastic/m... [more]
NDK_HELMI4.143e-1764.52Nucleoside diphosphate kinase OS=Heliobacterium mo... [more]
NDK_GLOVI4.143e-1764.52Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]
NDK2_SPIOL4.143e-1760.61Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
back to top