CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:21..345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PELTS (Nucleoside diphosphate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ndk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.411e-17
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+T++MIKPDGVQRGLVGEII RFEK+GF + GLK++ + R  AEKHY +   KPFF  L+
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIIARFEKRGFKIVGLKMIRIGRELAEKHYGEHKGKPFFEPLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_ACAM1 (Nucleoside diphosphate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=ndk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.411e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+ +KPDGVQRGLVGEII R+E KGF+L GLKLM V R  AE+HY +   KPFF  L+
Sbjct:    1 MERTFLAVKPDGVQRGLVGEIISRYEAKGFTLVGLKLMVVSRELAEQHYGEHKEKPFFSGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_BACHD (Nucleoside diphosphate kinase OS=Bacillus halodurans GN=ndk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.067e-17
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+T++MIKPDGVQR L+GEI+ RFEKKGF+L G KLMTV +  AE HY +   +PFFG L+
Sbjct:    1 MERTYLMIKPDGVQRNLIGEIVSRFEKKGFTLIGAKLMTVTKEQAETHYAEHKERPFFGELV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.067e-17
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  127 NLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +L++++Q +IM+KPDGVQRGLVGEII RFEKKGF L GLKL    +  AE+HY+ L+ K FF  LI
Sbjct:   78 SLEQVDQAYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKHLNQKSFFPKLI 143          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK4_SPIOL (Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.686e-16
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  136 EMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 321
            E E+TFI IKPDGVQRGL+ EI+ RFE+KGF L  +K++   + FA+KHY DLS +PFF  L
Sbjct:   84 EFERTFIAIKPDGVQRGLISEIVARFERKGFKLVAIKVVIPSKDFAQKHYHDLSERPFFNGL 145          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_THET8 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ndk PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.507e-16
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPDGV+RGLVGEI+ RFE+KGF +  LKLM + +  AE+HY +   KPFF  L+
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_THET2 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.507e-16
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPDGV+RGLVGEI+ RFE+KGF +  LKLM + +  AE+HY +   KPFF  L+
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMRISQELAERHYAEHREKPFFPGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.507e-16
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+ IKPDGVQRGLVG II RFE+KG++L GLKLM V R  AE+HY +   KPFF  L+
Sbjct:    1 MERTFLAIKPDGVQRGLVGTIIQRFEQKGYTLVGLKLMRVSRELAEQHYGEHKDKPFFPGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PYRFU (Nucleoside diphosphate kinase OS=Pyrococcus furiosus GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.507e-16
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 1
Query:  130 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            + E+E+T ++IKPD V RGL+GEII RFEKKG  + G+K++ +DR  AEKHYE+   KPFF +LI
Sbjct:    1 MNEVERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHKGKPFFEALI 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_NOSP7 (Nucleoside diphosphate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.507e-16
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+ IKPDGVQRGLVGEII RFE KGF+L GLK + V +  AE+HY     +PFFGSL+
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLKVSKELAEQHYGVHRERPFFGSLV 62          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK_PELTS5.411e-1762.90Nucleoside diphosphate kinase OS=Pelotomaculum the... [more]
NDK_ACAM15.411e-1764.52Nucleoside diphosphate kinase OS=Acaryochloris mar... [more]
NDK_BACHD7.067e-1762.90Nucleoside diphosphate kinase OS=Bacillus halodura... [more]
NDK2_PEA7.067e-1760.61Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK4_SPIOL2.686e-1659.68Nucleoside diphosphate kinase 4, chloroplastic OS=... [more]
NDK_THET83.507e-1659.68Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_THET23.507e-1659.68Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_THEEB3.507e-1664.52Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDK_PYRFU3.507e-1656.92Nucleoside diphosphate kinase OS=Pyrococcus furios... [more]
NDK_NOSP73.507e-1664.52Nucleoside diphosphate kinase OS=Nostoc punctiform... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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