CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:21..345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_ANASP (Nucleoside diphosphate kinase OS=Anabaena sp. (strain PCC 7120) GN=ndk PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.969e-15
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+ IKPDGVQRGLVGEII RFE KGF+L GLK + V +  AE+HY     +PFF SL+
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKA_PONAB (Nucleoside diphosphate kinase A OS=Pongo abelii GN=NME1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.969e-15
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK M       ++HY DL  +PFF  L+
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKA_HUMAN (Nucleoside diphosphate kinase A OS=Homo sapiens GN=NME1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.969e-15
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK M       ++HY DL  +PFF  L+
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_UNCMA (Nucleoside diphosphate kinase OS=Uncultured methanogenic archaeon RC-I GN=ndk PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.878e-15
Identity = 34/63 (53.97%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  136 EMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E E+TF+M+KPDGVQRGLVGEII RFE++G  + G+K++ V    A++HY + ++KPFF  L+
Sbjct:    3 ERERTFVMVKPDGVQRGLVGEIISRFERRGLKIVGMKMLEVSEELAKQHYAEHAAKPFFPGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_MACCJ (Nucleoside diphosphate kinase OS=Macrococcus caseolyticus (strain JCSC5402) GN=ndk PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.878e-15
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPDGV RGL+GEI+ R E KG  + G KLMTV    A+ HY + S KPFFG L+
Sbjct:    1 MEKTFLMIKPDGVGRGLIGEIVKRIENKGIKVVGAKLMTVSEDLAKTHYGEHSEKPFFGELV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_EMENI (Nucleoside diphosphate kinase OS=Emericella nidulans GN=swoH PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.878e-15
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            EQTFI IKPDGVQRGLVG II RFE +GF L  +KL +  R   E+HY DL  KPFF  L+
Sbjct:    4 EQTFIAIKPDGVQRGLVGPIISRFENRGFKLAAMKLTSPSRSLLEQHYSDLKEKPFFPGLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SYNS3 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.065e-15
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E++FI IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  AE+HY     +PFFG L+
Sbjct:    4 ERSFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFGGLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_LISMO (Nucleoside diphosphate kinase OS=Listeria monocytogenes GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.615e-15
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQT++M+KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_LISMH (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.615e-15
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQT++M+KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_LISMF (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.615e-15
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQT++M+KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLI 62          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK_ANASP2.969e-1562.90Nucleoside diphosphate kinase OS=Anabaena sp. (str... [more]
NDKA_PONAB2.969e-1562.30Nucleoside diphosphate kinase A OS=Pongo abelii GN... [more]
NDKA_HUMAN2.969e-1562.30Nucleoside diphosphate kinase A OS=Homo sapiens GN... [more]
NDK_UNCMA3.878e-1553.97Nucleoside diphosphate kinase OS=Uncultured methan... [more]
NDK_MACCJ3.878e-1559.68Nucleoside diphosphate kinase OS=Macrococcus caseo... [more]
NDK_EMENI3.878e-1562.30Nucleoside diphosphate kinase OS=Emericella nidula... [more]
NDK_SYNS35.065e-1562.30Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_LISMO6.615e-1558.06Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_LISMH6.615e-1558.06Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_LISMF6.615e-1558.06Nucleoside diphosphate kinase OS=Listeria monocyto... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
back to top