CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:21..345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_LISMC (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.615e-15
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQT++M+KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKC_DICDI (Nucleoside diphosphate kinase, cytosolic OS=Dictyostelium discoideum GN=ndkC-1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.615e-15
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 1
Query:  118 VSLNLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +S N    E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK +   +  AE HY +   +PFFG L+
Sbjct:    1 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 69          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_LISW6 (Nucleoside diphosphate kinase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.639e-15
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQT++M+KPDGV+RGL+GEI+ + EKKG  L   KL+ +DR  AE+HY +   KPFF  LI
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVAKIEKKGIKLVAGKLIQIDRKLAEQHYAEHIGKPFFEDLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_EXISA (Nucleoside diphosphate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.639e-15
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+M+KPDGV+RGL+GEII RFE KG++L  L+++T     AE HY +   KPFFG L+
Sbjct:    1 MEKTFLMVKPDGVKRGLIGEIISRFENKGYTLNRLEMVTPSVEVAEAHYAEHKEKPFFGELV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKA_MOUSE (Nucleoside diphosphate kinase A OS=Mus musculus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.639e-15
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK +       ++HY DL  +PFF  L+
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPFFTGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SYNSC (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9605) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  AE+HY     +PFF  L+
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLV 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SYNPX (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH8102) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  AE+HY     +PFF  L+
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLV 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SYNPW (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRGL+GEI+ RFE+KGF L GLK +T  R  AE+HY     +PFF  L+
Sbjct:    4 ERTFIAIKPDGVQRGLIGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFAGLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_HALMA (Nucleoside diphosphate kinase OS=Haloarcula marismortui GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  130 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            + E E+TF+M+KPDGVQRGL+G+I+ RFE +G  + G K M +D+  AE+HY +   KPFF  L+
Sbjct:    1 MSEHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFDGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_DESHY (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain Y51) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFF 312
            ME+TFIM+KPD VQRGLVG+II RFE KG  L G+KLM+VD+  AE+HY +   K FF
Sbjct:    1 MEKTFIMLKPDAVQRGLVGQIIARFETKGCKLVGMKLMSVDQALAEQHYAEHKGKSFF 58          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK_LISMC6.615e-1558.06Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDKC_DICDI6.615e-1553.62Nucleoside diphosphate kinase, cytosolic OS=Dictyo... [more]
NDK_LISW68.639e-1556.45Nucleoside diphosphate kinase OS=Listeria welshime... [more]
NDK_EXISA8.639e-1556.45Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDKA_MOUSE8.639e-1560.66Nucleoside diphosphate kinase A OS=Mus musculus GN... [more]
NDK_SYNSC1.128e-1462.30Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNPX1.128e-1462.30Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNPW1.128e-1460.66Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_HALMA1.128e-1450.77Nucleoside diphosphate kinase OS=Haloarcula marism... [more]
NDK_DESHY1.128e-1463.79Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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