CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:21..345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_DESHD (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFF 312
            ME+TFIM+KPD VQRGLVG+II RFE KG  L G+KLM+VD+  AE+HY +   K FF
Sbjct:    1 MEKTFIMLKPDAVQRGLVGQIIARFEAKGCKLVGMKLMSVDQALAEQHYAEHKGKSFF 58          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKA_RAT (Nucleoside diphosphate kinase A OS=Rattus norvegicus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK +       ++HY DL  +PFF  L+
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFFSGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SYNS9 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9902) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.474e-14
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  AE+HY     +PFF  L+
Sbjct:    3 ERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEEHYGVHKERPFFAGLV 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PYRKO (Nucleoside diphosphate kinase OS=Pyrococcus kodakaraensis GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.474e-14
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  133 KEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            K++E+T I++KPD V RGL+GEII RFEK+G  + G+K++ +DR  AEKHY +   KPFF  LI
Sbjct:    4 KQIERTLIILKPDAVVRGLMGEIISRFEKRGLKIVGMKMIWIDRKLAEKHYAEHKGKPFFEPLI 67          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_CORDI (Nucleoside diphosphate kinase OS=Corynebacterium diphtheriae GN=ndk PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.474e-14
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T I+IKPDGV+RGL+GEII R E+KG  +  L L   DR  AEKHY + + KPFFG L+
Sbjct:    3 ERTLILIKPDGVERGLIGEIIARIERKGLKISALDLRVADRETAEKHYAEHADKPFFGELV 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_ASPFU (Nucleoside diphosphate kinase OS=Aspergillus fumigatus GN=ndk1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.474e-14
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            EQTFI IKPDGVQRGL+G II RFE +GF L  +KL++  +   E+HY DLS KPFF  L+
Sbjct:    4 EQTFIAIKPDGVQRGLIGPIISRFENRGFKLVAMKLVSPPQSQLEQHYADLSDKPFFKGLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SULTO (Nucleoside diphosphate kinase OS=Sulfolobus tokodaii GN=ndk PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.925e-14
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +++TF+MIKPDGV+R L+GEII RFEK+G  + GLK++ +DRP AE+ YE+   K FF  LI
Sbjct:    3 IQRTFVMIKPDGVRRNLIGEIISRFEKRGLKIIGLKMVKIDRPTAERLYEEHKGKSFFEELI 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_BACSK (Nucleoside diphosphate kinase OS=Bacillus clausii (strain KSM-K16) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.925e-14
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+T++M+KPDGVQR L+G I+ RFE+KG++L   KL+T+ +  AE HY +   +PFFG L+
Sbjct:    1 MERTYVMVKPDGVQRNLIGNIVSRFEQKGYTLAAAKLVTLSKETAETHYSEHRERPFFGELV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STACT (Nucleoside diphosphate kinase OS=Staphylococcus carnosus (strain TM300) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.514e-14
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPDGVQR LVGEII R EKKG  L G K MTV +  AE HY + + KPF+  L+
Sbjct:    1 MERTFLMIKPDGVQRKLVGEIITRLEKKGLKLVGGKFMTVSKEKAETHYGEHADKPFYEGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.514e-14
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+M+KPDGVQRGLVGE+I R E+KG  +  +K++ + R  AE HY +   KPFF +L+
Sbjct:    1 MERTFVMVKPDGVQRGLVGEVIGRLERKGLKIVAMKMLWIAREMAENHYAEHREKPFFSALV 62          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK_DESHD1.128e-1463.79Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDKA_RAT1.128e-1460.66Nucleoside diphosphate kinase A OS=Rattus norvegic... [more]
NDK_SYNS91.474e-1460.66Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_PYRKO1.474e-1454.69Nucleoside diphosphate kinase OS=Pyrococcus kodaka... [more]
NDK_CORDI1.474e-1457.38Nucleoside diphosphate kinase OS=Corynebacterium d... [more]
NDK_ASPFU1.474e-1460.66Nucleoside diphosphate kinase OS=Aspergillus fumig... [more]
NDK_SULTO1.925e-1456.45Nucleoside diphosphate kinase OS=Sulfolobus tokoda... [more]
NDK_BACSK1.925e-1451.61Nucleoside diphosphate kinase OS=Bacillus clausii ... [more]
NDK_STACT2.514e-1461.29Nucleoside diphosphate kinase OS=Staphylococcus ca... [more]
NDK_ARCFU2.514e-1453.23Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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