CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:21..345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SYNJB (Nucleoside diphosphate kinase OS=Synechococcus sp. GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.283e-14
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TFI IKPDGVQRGLVG II R E +G+ L GLKL+ V +  AE HY +   +PFF SL+
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHKERPFFHSLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.283e-14
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  A +HY     +PFF  L+
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_HALLT (Nucleoside diphosphate kinase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.283e-14
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TF+M+KPDGVQRGL+GEI+ RFE++G  L G K M +D   A +HY +   KPFF  L+
Sbjct:    6 ERTFVMVKPDGVQRGLIGEIVSRFEERGLKLVGGKFMQIDEDLAHQHYGEHEGKPFFDGLV 66          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_FRASC (Nucleoside diphosphate kinase OS=Frankia sp. (strain CcI3) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.283e-14
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +E+T I++KPDGV RGLVGE++ R E+KG +L  L+L T++R  AE HY + +SKPFFG L+
Sbjct:    3 VERTLILVKPDGVSRGLVGEVVGRLERKGLTLVALELRTLERSVAETHYGEHASKPFFGELV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SYNP6 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndk PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.288e-14
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TFI IKPDGVQRGLVG II RFE+KGF L GLK +   R  AE+HY     +PFF  L+
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SYNE7 (Nucleoside diphosphate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=ndk PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.288e-14
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TFI IKPDGVQRGLVG II RFE+KGF L GLK +   R  AE+HY     +PFF  L+
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_IGNH4 (Nucleoside diphosphate kinase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.288e-14
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+ F+MIKPDGV+RGLVGEII R E+KG  +  +K++ +DR  AE+ YE+   KPFF  LI
Sbjct:    1 MEREFVMIKPDGVKRGLVGEIISRIERKGLKIVAMKMLKLDREMAERLYEEHKGKPFFDDLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_FRAAA (Nucleoside diphosphate kinase OS=Frankia alni (strain ACN14a) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.288e-14
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T I++KPDGV RGLVGE++ R E+KG +L  L+L T++R  AE HY + +SKPFFG L+
Sbjct:    4 ERTLILVKPDGVSRGLVGEVVGRLERKGLTLVALELRTLERSVAETHYGEHASKPFFGELV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_DEIGD (Nucleoside diphosphate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=ndk PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.288e-14
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF MIKPDGV+RGL  EI+ R +KKG+ + GLK M + R  AE+HY +   +PFFG L+
Sbjct:    1 MERTFAMIKPDGVRRGLTPEILARIQKKGYRVVGLKQMLISRELAERHYAEHRERPFFGELV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_CORJK (Nucleoside diphosphate kinase OS=Corynebacterium jeikeium (strain K411) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.288e-14
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T I+IKPDGV+ G VGEII R EKKG  L  L L T DR  AEKHY + S KPFFG L+
Sbjct:    3 ERTLILIKPDGVKNGHVGEIISRIEKKGLKLVELDLRTADRETAEKHYAEHSDKPFFGELV 63          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK_SYNJB3.283e-1459.68Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_PROMM3.283e-1459.68Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_HALLT3.283e-1454.10Nucleoside diphosphate kinase OS=Halorubrum lacusp... [more]
NDK_FRASC3.283e-1454.84Nucleoside diphosphate kinase OS=Frankia sp. (stra... [more]
NDK_SYNP64.288e-1461.29Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNE74.288e-1461.29Nucleoside diphosphate kinase OS=Synechococcus elo... [more]
NDK_IGNH44.288e-1456.45Nucleoside diphosphate kinase OS=Ignicoccus hospit... [more]
NDK_FRAAA4.288e-1455.74Nucleoside diphosphate kinase OS=Frankia alni (str... [more]
NDK_DEIGD4.288e-1454.84Nucleoside diphosphate kinase OS=Deinococcus geoth... [more]
NDK_CORJK4.288e-1462.30Nucleoside diphosphate kinase OS=Corynebacterium j... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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