CX309112

Overview
NameCX309112
Unique NameCX309112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309112 vs. ExPASy Swiss-Prot
Match: GUN19_ARATH (Endoglucanase 19 OS=Arabidopsis thaliana GN=At4g11050 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.992e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    7 RSPNPNVLSGAILGGPDNTDNFADDRNNYQQSEPATYINAPFVGAVAFFSSKTT 168
            +  +PNVL+GA++GGPD  DNFAD R+NY+Q+EPATY NAP +G +A   S +T
Sbjct:  441 KGSDPNVLTGALVGGPDAYDNFADQRDNYEQTEPATYNNAPLLGVLARLISGST 494          
BLAST of CX309112 vs. ExPASy Swiss-Prot
Match: GUN6_ARATH (Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g64390 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.213e-12
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    7 RSPNPNVLSGAILGGPDNTDNFADDRNNYQQSEPATYINAPFVGAVAFFSS 159
            +  +PN+L+GAI+GGPD  DNFAD R+NY+Q+EPATY NAP +G +A  SS
Sbjct:  440 KGSDPNLLTGAIVGGPDAYDNFADRRDNYEQTEPATYNNAPLLGVLARLSS 490          
BLAST of CX309112 vs. ExPASy Swiss-Prot
Match: GUN23_ARATH (Endoglucanase 23 OS=Arabidopsis thaliana GN=At4g39000 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    4 SRSPNPNVLSGAILGGPDNTDNFADDRNNYQQSEPATYINAPFVGAVAFFSS 159
            S +PNPN+L GA++GGPD  D F   R N  ++EP TYINAPFVG  A+F S
Sbjct:  437 SPNPNPNILIGAVIGGPDVDDRFIGGRTNASETEPTTYINAPFVGVFAYFKS 488          
BLAST of CX309112 vs. ExPASy Swiss-Prot
Match: GUN2_ORYSJ (Endoglucanase 2 OS=Oryza sativa subsp. japonica GN=GLU5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    7 RSPNPNVLSGAILGGPDNTDNFADDRNNYQQSEPATYINAPFVGAVA 147
            R  NPN+L GA++GGPD  D+FAD+RNNY+Q+E ATY NAP +G +A
Sbjct:  457 RGGNPNLLDGAVVGGPDEHDDFADERNNYEQTEAATYNNAPLMGILA 503          
BLAST of CX309112 vs. ExPASy Swiss-Prot
Match: GUN1_ORYSJ (Endoglucanase 1 OS=Oryza sativa subsp. japonica GN=GLU7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 1
Query:   16 NPNVLSGAILGGPDNTDNFADDRNNYQQSEPATYINAPFVGAVA 147
            NPN+L GA++GGPD  D FAD+RNNYQQ+E ATY NAP +G +A
Sbjct:  465 NPNLLDGAVVGGPDGRDGFADERNNYQQTEVATYNNAPLMGVLA 508          
BLAST of CX309112 vs. ExPASy Swiss-Prot
Match: GUN4_ARATH (Endoglucanase 4 OS=Arabidopsis thaliana GN=At1g23210 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 YSRSPNPNVLSGAILGGPDNTDNFADDRNNYQQSEPATYINAPFVGAVAFFSS 159
            +S +PNPN+L GA++GGP+ TD+F D R  +Q +EP TYINAP +G + +FS+
Sbjct:  435 FSNNPNPNLLIGAVVGGPNITDDFPDSRPYFQLTEPTTYINAPLLGLLGYFSA 487          
BLAST of CX309112 vs. ExPASy Swiss-Prot
Match: GUN3_ORYSJ (Endoglucanase 3 OS=Oryza sativa subsp. japonica GN=GLU8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 YSRSPNPNVLSGAILGGPDNTDNFADDRNNYQQSEPATYINAPFVGAVAFFS 156
            YS   NPNVL GA++GGP+  D F D R++++ SEPATYINAP VGA+A+ +
Sbjct:  442 YSGVANPNVLVGAVVGGPNLQDQFPDQRSDHEHSEPATYINAPLVGALAYLA 493          
BLAST of CX309112 vs. ExPASy Swiss-Prot
Match: GUN17_ORYSJ (Endoglucanase 17 OS=Oryza sativa subsp. japonica GN=GLU13 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    4 SRSPNPNVLSGAILGGPDNT-DNFADDRNNYQQSEPATYINAPFVGAVAFFSS 159
            S +PNPN+L GA++GGP NT D F D R  +QQSEP TYINAP +G +A+FS+
Sbjct:  433 SAAPNPNLLVGAVVGGPSNTSDAFPDARAVFQQSEPTTYINAPLLGLLAYFSA 485          
BLAST of CX309112 vs. ExPASy Swiss-Prot
Match: GUN6_ORYSJ (Endoglucanase 6 OS=Oryza sativa subsp. japonica GN=Os02g0733300 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.587e-11
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    4 SRSPNPNVLSGAILGGP-DNTDNFADDRNNYQQSEPATYINAPFVGAVAFFSS 159
            S +PNPN+L GA++GGP D TD F D R  +QQSEP TYINAP +G +A+FS+
Sbjct:  446 SAAPNPNLLVGAVVGGPSDATDAFPDARAVFQQSEPTTYINAPLMGLLAYFSA 498          
BLAST of CX309112 vs. ExPASy Swiss-Prot
Match: GUN13_ARATH (Endoglucanase 13 OS=Arabidopsis thaliana GN=At2g44550 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 27/46 (58.70%), Postives = 38/46 (82.61%), Query Frame = 1
Query:   10 SPNPNVLSGAILGGPDNTDNFADDRNNYQQSEPATYINAPFVGAVA 147
            +PNPNVL+GA++GGPD+ D + D+R+N+QQ+EPAT   AP VG +A
Sbjct:  442 APNPNVLAGAVVGGPDDNDVYGDERSNFQQAEPATVTTAPLVGVLA 487          
The following BLAST results are available for this feature:
BLAST of CX309112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GUN19_ARATH3.992e-1257.41Endoglucanase 19 OS=Arabidopsis thaliana GN=At4g11... [more]
GUN6_ARATH5.213e-1260.78Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g643... [more]
GUN23_ARATH6.809e-1257.69Endoglucanase 23 OS=Arabidopsis thaliana GN=At4g39... [more]
GUN2_ORYSJ1.161e-1161.70Endoglucanase 2 OS=Oryza sativa subsp. japonica GN... [more]
GUN1_ORYSJ1.161e-1165.91Endoglucanase 1 OS=Oryza sativa subsp. japonica GN... [more]
GUN4_ARATH1.517e-1152.83Endoglucanase 4 OS=Arabidopsis thaliana GN=At1g232... [more]
GUN3_ORYSJ1.517e-1157.69Endoglucanase 3 OS=Oryza sativa subsp. japonica GN... [more]
GUN17_ORYSJ1.517e-1160.38Endoglucanase 17 OS=Oryza sativa subsp. japonica G... [more]
GUN6_ORYSJ2.587e-1160.38Endoglucanase 6 OS=Oryza sativa subsp. japonica GN... [more]
GUN13_ARATH4.413e-1158.70Endoglucanase 13 OS=Arabidopsis thaliana GN=At2g44... [more]

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Properties
Property NameValue
Genbank descriptionC21008F11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309112 ID=CX309112; Name=CX309112; organism=Citrus clementina; type=EST; length=410bp
TACTCTAGATCACCCAATCCAAATGTTCTCAGTGGAGCTATATTAGGTGG
GCCTGATAATACAGACAATTTTGCCGATGATCGTAATAATTATCAGCAGT
CAGAACCAGCTACATACATCAATGCGCCGTTTGTTGGTGCTGTTGCTTTC
TTCTCATCCAAAACCACCACAAATTAACTAAAATGTTCTTTGTTTCTTTC
TTGAGGATTGGCGTGAATCTGTCTTATCCTGTGTGATGTGAGAATTTGAG
AAGTTTGGTTTACAATGCTTCCAATTCCACGTCAGAACTGTAACCTCTAA
TAATTCTTCTCTTGAGTTTTTGAGTAATATGGTAAGTAATATATCAATTA
TGGCAAAAGAGATATCTTTGCCAACTTTGAGCTAAANAAAAAAAAAAAAA
AAAAAAAAAA
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