CX309112

Overview
NameCX309112
Unique NameCX309112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX309112 vs. ExPASy Swiss-Prot
Match: GUN15_ORYSJ (Endoglucanase 15 OS=Oryza sativa subsp. japonica GN=Os05g0212300 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.528e-11
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   16 NPNVLSGAILGGPDNTDNFADDRNNYQQSEPATYINAPFVGAVA 147
            NPN+L GA++GGPD  D+FAD+R+NY+Q+E ATY NAP +G +A
Sbjct:  453 NPNLLDGAVVGGPDEYDDFADERDNYEQTEAATYNNAPLLGVLA 496
[Close]
BLAST of CX309112 vs. ExPASy Swiss-Prot
Match: GUN22_ARATH (Endoglucanase 22 OS=Arabidopsis thaliana GN=At4g38990 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 SRSPNPNVLSGAILGGPDNTDNFADDRNNYQQSEPATYINAPFVGAVAFFSS 159
            S +P+PNVL GA++GGP+  D F   R N  ++EP TYINAPFVG +A+F +
Sbjct:  440 SPNPDPNVLVGAVIGGPNIDDKFVGGRTNASETEPTTYINAPFVGLLAYFKA 491
The following BLAST results are available for this feature:
BLAST of CX309112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GUN15_ORYSJ7.528e-1161.36Endoglucanase 15 OS=Oryza sativa subsp. japonica G... [more]
GUN22_ARATH9.832e-1153.85Endoglucanase 22 OS=Arabidopsis thaliana GN=At4g38... [more]

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Properties
Property NameValue
Genbank descriptionC21008F11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309112 ID=CX309112; Name=CX309112; organism=Citrus clementina; type=EST; length=410bp
TACTCTAGATCACCCAATCCAAATGTTCTCAGTGGAGCTATATTAGGTGG
GCCTGATAATACAGACAATTTTGCCGATGATCGTAATAATTATCAGCAGT
CAGAACCAGCTACATACATCAATGCGCCGTTTGTTGGTGCTGTTGCTTTC
TTCTCATCCAAAACCACCACAAATTAACTAAAATGTTCTTTGTTTCTTTC
TTGAGGATTGGCGTGAATCTGTCTTATCCTGTGTGATGTGAGAATTTGAG
AAGTTTGGTTTACAATGCTTCCAATTCCACGTCAGAACTGTAACCTCTAA
TAATTCTTCTCTTGAGTTTTTGAGTAATATGGTAAGTAATATATCAATTA
TGGCAAAAGAGATATCTTTGCCAACTTTGAGCTAAANAAAAAAAAAAAAA
AAAAAAAAAA
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