CX309122

Overview
NameCX309122
Unique NameCX309122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig768 contig Ccv1_Contig768:786..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_ASPNC (Autophagy-related protein 8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=atg8 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.973e-32
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVPADLTVGQFVYV+RKRIKLSPEKAIFIFV  +LPPTAA+MS+IYEE++DEDGFLY+TYSGENTFG
Sbjct:   44 IDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_ASPFU (Autophagy-related protein 8 OS=Aspergillus fumigatus GN=atg8 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.973e-32
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVPADLTVGQFVYV+RKRIKLSPEKAIFIFV  +LPPTAA+MS+IYEE++DEDGFLY+TYSGENTFG
Sbjct:   44 IDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_ASPCL (Autophagy-related protein 8 OS=Aspergillus clavatus GN=atg8 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.973e-32
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVPADLTVGQFVYV+RKRIKLSPEKAIFIFV  +LPPTAA+MS+IYEE++DEDGFLY+TYSGENTFG
Sbjct:   44 IDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_PHYIN (Autophagy-related protein 8 OS=Phytophthora infestans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.108e-31
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +IDKKKYLVPADLTVGQFVYV+RKRIKLSPEKAIFIF+ N+LPPTAA+MS IYEE +D DGFLY+TYSGENTFG
Sbjct:   42 DIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPTAALMSNIYEEQKDVDGFLYITYSGENTFG 115          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_COCIM (Autophagy-related protein 8 OS=Coccidioides immitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.108e-31
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVPADLTVGQFVYV+RKRIKLSPEKAIFIFV  +LPPTAA+MS+IYEE++D+DGFLY+TYSGENTFG
Sbjct:   44 IDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDDDGFLYITYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_SCLS1 (Autophagy-related protein 8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=atg8 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.223e-31
Identity = 62/73 (84.93%), Postives = 71/73 (97.26%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVP+DLTVGQFVYV+RKRIKLSPEKAIFIFV  +LPPTAA+MS+IYEE++DEDGFLY++YSGENTFG
Sbjct:   44 IDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_BOTFB (Autophagy-related protein 8 OS=Botryotinia fuckeliana (strain B05.10) GN=atg8 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.223e-31
Identity = 62/73 (84.93%), Postives = 71/73 (97.26%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVP+DLTVGQFVYV+RKRIKLSPEKAIFIFV  +LPPTAA+MS+IYEE++DEDGFLY++YSGENTFG
Sbjct:   44 IDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_MAGGR (Autophagy-related protein 8 OS=Magnaporthe grisea GN=ATG8 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.498e-31
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVPADLTVGQFVYV+RKRIKLSPEKAIFIFV++ LPPTAA+MS+IYE ++DEDGFLY+TYSGENTFG
Sbjct:   44 IDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVQDTLPPTAALMSSIYELHKDEDGFLYITYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_YARLI (Autophagy-related protein 8 OS=Yarrowia lipolytica GN=ATG8 PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 7.181e-31
Identity = 62/73 (84.93%), Postives = 71/73 (97.26%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVPADLTVGQFVYV+RKRIKLS E+AIFIFV ++LPPTAA+MS+IYEE++DEDGFLY+TYSGENTFG
Sbjct:   44 IDKKKYLVPADLTVGQFVYVIRKRIKLSSERAIFIFVDDVLPPTAALMSSIYEEHKDEDGFLYVTYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_SCHPO (Autophagy-related protein 8 OS=Schizosaccharomyces pombe GN=atg8 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 7.181e-31
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVP+DLTVGQFVYV+RKRIKLSPEKAIFIF+  ILPPTAA+MS IYEE++ EDGFLY+TYSGENTFG
Sbjct:   44 IDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of CX309122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
ATG8_ASPNC4.973e-3287.67Autophagy-related protein 8 OS=Aspergillus niger (... [more]
ATG8_ASPFU4.973e-3287.67Autophagy-related protein 8 OS=Aspergillus fumigat... [more]
ATG8_ASPCL4.973e-3287.67Autophagy-related protein 8 OS=Aspergillus clavatu... [more]
ATG8_PHYIN1.108e-3185.14Autophagy-related protein 8 OS=Phytophthora infest... [more]
ATG8_COCIM1.108e-3186.30Autophagy-related protein 8 OS=Coccidioides immiti... [more]
ATG8_SCLS13.223e-3184.93Autophagy-related protein 8 OS=Sclerotinia sclerot... [more]
ATG8_BOTFB3.223e-3184.93Autophagy-related protein 8 OS=Botryotinia fuckeli... [more]
ATG8_MAGGR5.498e-3186.30Autophagy-related protein 8 OS=Magnaporthe grisea ... [more]
ATG8_YARLI7.181e-3184.93Autophagy-related protein 8 OS=Yarrowia lipolytica... [more]
ATG8_SCHPO7.181e-3184.93Autophagy-related protein 8 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC21008G09Rv AbsLeaSub1 Citrus clementina cDNA clone C21008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309122 ID=CX309122; Name=CX309122; organism=Citrus clementina; type=EST; length=435bp
TTGAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTGGC
CAGTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCAGTCCTGAGAAGGC
TATTTTCATTTTTGTGAAAAACATTCTGCCACCCACTGCGGCAATGATGT
CTGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGACC
TACAGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCAAGCTACT
ATTATGTGAATAATGCTTCAAGAAGTTAGGTGAAGAAGGGGTTAAGTTGT
AAATAGTTCTATGTTCCATTAGTTTGGAATTTCTTTTAGTTAATGGTATT
ATATGTAACAACCTAAAAGTTGGGATCAGCAACTATTTACATAAAATTCA
ATAGTTTTCTCGAAAAAAAAAAAAAAAAAAAAAAA
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