CX309122

Overview
NameCX309122
Unique NameCX309122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig768 contig Ccv1_Contig768:786..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_DEBHA (Autophagy-related protein 8 OS=Debaryomyces hansenii GN=ATG8 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 3.017e-29
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            EIDK+KYLVP DL+VGQFVYV+RKRIKL  EKAIFIF+ +ILPPTAA+MS IYEE++DEDGFLY+ YSGENTFG
Sbjct:   43 EIDKRKYLVPGDLSVGQFVYVIRKRIKLPSEKAIFIFINDILPPTAALMSTIYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_CANGA (Autophagy-related protein 8 OS=Candida glabrata GN=ATG8 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.940e-29
Identity = 57/74 (77.03%), Postives = 69/74 (93.24%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            E+DK+KYLVPADLTVGQFVYV+RKRI L PEKAIFIFV + LPPTA++MS +Y+E++D+DGFLY+TYSGENTFG
Sbjct:   43 EVDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTASLMSQVYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_PICPA (Autophagy-related protein 8 OS=Pichia pastoris GN=ATG8 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.146e-29
Identity = 57/74 (77.03%), Postives = 68/74 (91.89%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            E+DK+KYLVP DLTVGQFVYV+RKRIK+  EKAIFIF+ +ILPPTAA+MS +YEE++DEDGFLY+ YSGENTFG
Sbjct:   43 EVDKRKYLVPCDLTVGQFVYVIRKRIKIPSEKAIFIFIDDILPPTAALMSKVYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_LODEL (Autophagy-related protein 8 OS=Lodderomyces elongisporus GN=ATG8 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.146e-29
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            EIDK+KYLVP DLTVGQFVYV+RKRIKL  EKAIFIFV +ILPPTAA++S IYEE++D+DGFLY+ YSGENTFG
Sbjct:   43 EIDKRKYLVPVDLTVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDDDGFLYVLYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_PICST (Autophagy-related protein 8 OS=Pichia stipitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.721e-29
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            EIDK+KYLVP DL+VGQFVYV+RKRIKL  EKAIFIFV +ILPPTAA++S IYEE++DEDGFLY+ YSGENTFG
Sbjct:   43 EIDKRKYLVPVDLSVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_PICAN (Autophagy-related protein 8 OS=Pichia angusta GN=ATG8 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.956e-28
Identity = 58/74 (78.38%), Postives = 68/74 (91.89%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            EIDK+KYLVP+DLTVGQFVYV+RKRI+L  EKAIFIFV +ILPPTA++MS IYE+ +DEDGFLY+ YSGENTFG
Sbjct:   43 EIDKRKYLVPSDLTVGQFVYVIRKRIQLPSEKAIFIFVNDILPPTASLMSTIYEQYKDEDGFLYILYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_ASHGO (Autophagy-related protein 8 OS=Ashbya gossypii GN=ATG8 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.705e-28
Identity = 55/74 (74.32%), Postives = 68/74 (91.89%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            E+D++KYLVPADLTVGQFVYV+R+RIKL  EKAIFIFV + LPPTAA+M A+Y+E++D+DGFLY+ YSGENTFG
Sbjct:   42 EVDRRKYLVPADLTVGQFVYVIRRRIKLPAEKAIFIFVNDTLPPTAALMFAVYQEHKDKDGFLYVKYSGENTFG 115          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_KLULA (Autophagy-related protein 8 OS=Kluyveromyces lactis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.162e-27
Identity = 55/74 (74.32%), Postives = 68/74 (91.89%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +IDK+KYLVP DLTVGQFVYV+RKRIKL  EKAIFIFV + LPPTAA+MS+IY++++D+DGFLY++YS ENTFG
Sbjct:   43 DIDKRKYLVPGDLTVGQFVYVIRKRIKLPAEKAIFIFVNDTLPPTAALMSSIYQQHKDKDGFLYVSYSSENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_DICDI (Autophagy-related protein 8 OS=Dictyostelium discoideum GN=atg8 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.452e-25
Identity = 53/75 (70.67%), Postives = 66/75 (88.00%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRI-KLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +IDKKKYLVPAD+TVG+FVY +RK + K+S EKAI++FV N +PPTAA++S IYE  +DEDGFLY+TYSGENTFG
Sbjct:   45 DIDKKKYLVPADITVGKFVYEIRKHMTKVSAEKAIYLFVNNTIPPTAALISQIYERYKDEDGFLYITYSGENTFG 119          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.093e-22
Identity = 44/74 (59.46%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            ++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +PPT+A M  +YE+NR+ED FLY+ YS E+ +G
Sbjct:   43 DLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVYG 116          
The following BLAST results are available for this feature:
BLAST of CX309122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
ATG8_DEBHA3.017e-2979.73Autophagy-related protein 8 OS=Debaryomyces hansen... [more]
ATG8_CANGA3.940e-2977.03Autophagy-related protein 8 OS=Candida glabrata GN... [more]
ATG8_PICPA5.146e-2977.03Autophagy-related protein 8 OS=Pichia pastoris GN=... [more]
ATG8_LODEL5.146e-2979.73Autophagy-related protein 8 OS=Lodderomyces elongi... [more]
ATG8_PICST6.721e-2979.73Autophagy-related protein 8 OS=Pichia stipitis GN=... [more]
ATG8_PICAN1.956e-2878.38Autophagy-related protein 8 OS=Pichia angusta GN=A... [more]
ATG8_ASHGO9.705e-2874.32Autophagy-related protein 8 OS=Ashbya gossypii GN=... [more]
ATG8_KLULA2.162e-2774.32Autophagy-related protein 8 OS=Kluyveromyces lacti... [more]
ATG8_DICDI3.452e-2570.67Autophagy-related protein 8 OS=Dictyostelium disco... [more]
GBRL1_PONAB6.093e-2259.46Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionC21008G09Rv AbsLeaSub1 Citrus clementina cDNA clone C21008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309122 ID=CX309122; Name=CX309122; organism=Citrus clementina; type=EST; length=435bp
TTGAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTGGC
CAGTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCAGTCCTGAGAAGGC
TATTTTCATTTTTGTGAAAAACATTCTGCCACCCACTGCGGCAATGATGT
CTGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGACC
TACAGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCAAGCTACT
ATTATGTGAATAATGCTTCAAGAAGTTAGGTGAAGAAGGGGTTAAGTTGT
AAATAGTTCTATGTTCCATTAGTTTGGAATTTCTTTTAGTTAATGGTATT
ATATGTAACAACCTAAAAGTTGGGATCAGCAACTATTTACATAAAATTCA
ATAGTTTTCTCGAAAAAAAAAAAAAAAAAAAAAAA
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