CX309122

Overview
NameCX309122
Unique NameCX309122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig768 contig Ccv1_Contig768:786..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL2_RAT (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Rattus norvegicus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.958e-22
Identity = 44/74 (59.46%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +IDK+KYLVP+D+TV QF++++RKRI+L  EKAIF+FV   +P ++  M  +YE+ +DEDGFLY+ YSGENTFG
Sbjct:   43 DIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.958e-22
Identity = 44/74 (59.46%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +IDK+KYLVP+D+TV QF++++RKRI+L  EKAIF+FV   +P ++  M  +YE+ +DEDGFLY+ YSGENTFG
Sbjct:   43 DIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.958e-22
Identity = 44/74 (59.46%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +IDK+KYLVP+D+TV QF++++RKRI+L  EKAIF+FV   +P ++  M  +YE+ +DEDGFLY+ YSGENTFG
Sbjct:   43 DIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.958e-22
Identity = 44/74 (59.46%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +IDK+KYLVP+D+TV QF++++RKRI+L  EKAIF+FV   +P ++  M  +YE+ +DEDGFLY+ YSGENTFG
Sbjct:   43 DIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.773e-21
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            I+KKK+LVP D++VGQF+Y++  R+ LSP KA+F+FV N LP TAA+M ++YE  +D+DGF+YM YS E TFG
Sbjct:   43 IEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.315e-21
Identity = 43/74 (58.11%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            ++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   43 DLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.315e-21
Identity = 43/74 (58.11%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            ++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   43 DLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.315e-21
Identity = 43/74 (58.11%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            ++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   43 DLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.315e-21
Identity = 43/74 (58.11%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            ++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   43 DLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.315e-21
Identity = 43/74 (58.11%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            ++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   43 DLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
The following BLAST results are available for this feature:
BLAST of CX309122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
GBRL2_RAT7.958e-2259.46Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_MOUSE7.958e-2259.46Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN7.958e-2259.46Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN7.958e-2259.46Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8I_ARATH1.773e-2158.90Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
GBRL1_XENTR2.315e-2158.11Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENLA2.315e-2158.11Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT2.315e-2158.11Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE2.315e-2158.11Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN2.315e-2158.11Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionC21008G09Rv AbsLeaSub1 Citrus clementina cDNA clone C21008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309122 ID=CX309122; Name=CX309122; organism=Citrus clementina; type=EST; length=435bp
TTGAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTGGC
CAGTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCAGTCCTGAGAAGGC
TATTTTCATTTTTGTGAAAAACATTCTGCCACCCACTGCGGCAATGATGT
CTGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGACC
TACAGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCAAGCTACT
ATTATGTGAATAATGCTTCAAGAAGTTAGGTGAAGAAGGGGTTAAGTTGT
AAATAGTTCTATGTTCCATTAGTTTGGAATTTCTTTTAGTTAATGGTATT
ATATGTAACAACCTAAAAGTTGGGATCAGCAACTATTTACATAAAATTCA
ATAGTTTTCTCGAAAAAAAAAAAAAAAAAAAAAAA
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