CX309122

Overview
NameCX309122
Unique NameCX309122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig768 contig Ccv1_Contig768:786..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.315e-21
Identity = 43/74 (58.11%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            ++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   43 DLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.315e-21
Identity = 43/74 (58.11%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            ++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   43 DLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.737e-21
Identity = 42/75 (56.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 227
            ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G+
Sbjct:   43 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.737e-21
Identity = 42/75 (56.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 227
            ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G+
Sbjct:   43 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.737e-21
Identity = 42/75 (56.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 227
            ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G+
Sbjct:   43 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.737e-21
Identity = 42/75 (56.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 227
            ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G+
Sbjct:   43 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.737e-21
Identity = 42/75 (56.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 227
            ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G+
Sbjct:   43 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            ++DKKKYLVP+DLTVGQF +++RKRI+L PE A+F FV N++P T   M  +Y+++ +ED FLY+ YS E+ +G
Sbjct:   43 DLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 40/74 (54.05%), Postives = 57/74 (77.03%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            ++D++KYLVP+DLT GQF  ++RKRI L PE A+F FV N +PPT+A M  +YE++ +ED FLY+ YS E+ +G
Sbjct:   43 DLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 40/74 (54.05%), Postives = 57/74 (77.03%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +++K KYLVP D+TVG F++++ KR++L P KA+F+FV N LP TA+ M ++Y   ++EDGFLYM YS E TFG
Sbjct:   46 DMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119          
The following BLAST results are available for this feature:
BLAST of CX309122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
GBRL1_CAVPO2.315e-2158.11Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_BOVIN2.315e-2158.11Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT6.737e-2156.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT6.737e-2156.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE6.737e-2156.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN6.737e-2156.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN6.737e-2156.00Gamma-aminobutyric acid receptor-associated protei... [more]
LGG1_CAEEL9.728e-2054.05Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
GBRL3_HUMAN1.659e-1954.05Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8H_ARATH3.697e-1954.05Autophagy-related protein 8h OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC21008G09Rv AbsLeaSub1 Citrus clementina cDNA clone C21008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309122 ID=CX309122; Name=CX309122; organism=Citrus clementina; type=EST; length=435bp
TTGAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTGGC
CAGTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCAGTCCTGAGAAGGC
TATTTTCATTTTTGTGAAAAACATTCTGCCACCCACTGCGGCAATGATGT
CTGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGACC
TACAGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCAAGCTACT
ATTATGTGAATAATGCTTCAAGAAGTTAGGTGAAGAAGGGGTTAAGTTGT
AAATAGTTCTATGTTCCATTAGTTTGGAATTTCTTTTAGTTAATGGTATT
ATATGTAACAACCTAAAAGTTGGGATCAGCAACTATTTACATAAAATTCA
ATAGTTTTCTCGAAAAAAAAAAAAAAAAAAAAAAA
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