DY258283

Overview
NameDY258283
Unique NameDY258283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1066 contig Ccv1_Contig1066:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL_TOBAC (V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.936e-45
Identity = 99/130 (76.15%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK KSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   36 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.936e-45
Identity = 99/130 (76.15%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK KSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   35 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL_AVESA (V-type proton ATPase 16 kDa proteolipid subunit OS=Avena sativa GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.446e-45
Identity = 99/130 (76.15%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK Y+LFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   36 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 79/109 (72.48%), Postives = 79/109 (72.48%), Query Frame = 1
Query:   64 VPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            VPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:    1 VPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 109          
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL_PLECA (V-type proton ATPase 16 kDa proteolipid subunit OS=Pleurochrysis carterae GN=VAP PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.352e-28
Identity = 71/126 (56.35%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI-NPKA--KSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            KSGVGV+SMGVM+P+LVMKSI+PVVMAGVLGIYGLIIAVII  G+  P+     Y  F G+                 +AIGIVGDAGVRA+AQQ KL+VGM            YGLIVG+IL+S+
Sbjct:   34 KSGVGVSSMGVMKPDLVMKSIIPVVMAGVLGIYGLIIAVIIGNGVKGPEGGKPQYSSFTGFAHLAAGLACGLSGMAAGIAIGIVGDAGVRASAQQAKLYVGMVLILIFAEALGLYGLIVGLILTSK 159          
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL_HELVI (V-type proton ATPase 16 kDa proteolipid subunit OS=Heliothis virescens GN=VHA16 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.143e-25
Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            KSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++  + +Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:   33 KSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155          
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL_MANSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Manduca sexta GN=VHA16 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.493e-25
Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            KSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++  + +Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:   33 KSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155          
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Neurospora crassa GN=vma-3 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 58/124 (46.77%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRA 372
            KSGVG+A+MGV+RP+L++K+IVPV+MAG++GIYGL+++V+IS  +      Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV ++++S+A
Sbjct:   34 KSGVGIAAMGVLRPDLIVKNIVPVIMAGIIGIYGLVVSVLISDALT--QDHYALYTGFIQLGAGLAVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLMNSKA 155          
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL_ASCSU (V-type proton ATPase 16 kDa proteolipid subunit OS=Ascaris suum GN=12 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.678e-25
Identity = 56/122 (45.90%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 366
            KS VG++SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:   39 KSAVGISSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLRGKVTSASAGYTLDKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL_AEDAE (V-type proton ATPase 16 kDa proteolipid subunit OS=Aedes aegypti GN=AAEL000291 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.264e-24
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            KSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++   K Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:   36 KSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDTPTK-YSLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 157          
The following BLAST results are available for this feature:
BLAST of DY258283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_TOBAC4.936e-4576.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SOLLC4.936e-4576.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AVESA6.446e-4576.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MAIZE8.733e-3472.48V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_PLECA9.352e-2856.35V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HELVI1.143e-2547.97V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MANSE1.493e-2547.97V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_NEUCR3.326e-2546.77V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ASCSU9.678e-2545.90V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AEDAE1.264e-2448.78V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1AA04FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258283 ID=DY258283; Name=DY258283; organism=Citrus clementina; type=EST; length=680bp
AAGAGTGGTGTTGGTGTGGCGTCAATGGGTGTTATGAGGCCTGAGCTGGT
GATGAAGTCGATTGTGCCAGTTGTTATGGCTGGTGTTTTGGGTATATATG
GTTTGATTATTGCTGTTATTATCAGTACTGGGATTAACCCCAAGGCCAAG
TCATATTACCTTTTTGATGGCTATGCTCATCTCTCCTCCGGTTTGGCTTG
TGGTCTTGCCGGGCTTTCTGCTGGAATGGCTATTGGAATCGTTGGTGACG
CTGGTGTCAGAGCCAATGCACAGCAGCCAAAACTCTTTGTTGGGATGATC
CTTATCCTCATTTTCGCTGAAGCCCTTGCACTGTATGGCCTTATTGTTGG
TATCATCTTGTCTTCACGTGCTGGTCAGTCCAGAGCAGATTAAGAAGGGA
ATTTGTATTGCTAAGTATTCTTTTATAACTTGTCACTCTGGGGGAGCGAG
ATTTTTTTTAAATTATTCTCAGGTTCAAGTGGATAGCACTTGCTCAAAAT
TTCTTGTGGAAGTTGCCGTTCTGCGAGTCATTTGTATGTTACTCCATGTT
TCTGGTAGTAGGATTGAGTTTCTTCAAACAATAAAGTTTGCAAAGCTGTC
CATGCACTTTTGCAGAACTTTAACTGTCAGAAAGGAATTTTATTCGGTAA
TCTAGTGCATGTATTATCCTATTATCTATT
back to top