DY258283

Overview
NameDY258283
Unique NameDY258283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1066 contig Ccv1_Contig1066:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL_ENTHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba histolytica GN=VMA3 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 52/127 (40.94%), Postives = 71/127 (55.91%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQS 381
            KS VG++S+GVM+PE +++S+ PVV AG++G+YGLI+ +++   IN     Y L   +                 MAIGI GD GVR  AQQPKLFVGM            YG IV +I++S    S
Sbjct:   43 KSSVGISSVGVMKPEFIVRSVAPVVFAGIIGLYGLIVCILLF--INVTKSEYSLNRAFLDLGAGLTCGLCGLASGMAIGISGDCGVRGAAQQPKLFVGMLICLIFSEALALYGFIVALIMASTGENS 167          
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL2_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Neurospora crassa GN=vma-11 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 47/126 (37.30%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINP--KAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRA 372
            KSG+G+A +G  RP+L+MK ++PVVM+G++ +Y L++AV+I+  + P    + Y LF+G+                   IGIVGD GVR+   Q ++FVGM            YGLIV +IL++++
Sbjct:   40 KSGIGIAGVGTFRPDLIMKCLIPVVMSGIIAVYALVVAVLIAQDLGPPGSGQHYSLFNGFMHLACGLSVGLTGLAAGYCIGIVGDKGVRSFMLQSRIFVGMVLILIFGEVLGLYGLIVALILNTKS 165          
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL2_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Schizosaccharomyces pombe GN=vma11 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    4 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            +G G+A++G  RPE+VMKS++PVVM+G++G+YGL+++V+I+  ++P    Y LF G+                  AIG+VGD GV++  +Q ++FV M            YGLIVG+IL ++
Sbjct:   36 AGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMSVLIAGDMSPD-NDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQDRIFVSMVLILIFAEVLGLYGLIVGLILQTK 156          
BLAST of DY258283 vs. ExPASy Swiss-Prot
Match: VATL_ENTDI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba dispar GN=VMA3 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.652e-19
Identity = 51/127 (40.16%), Postives = 70/127 (55.12%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQS 381
            KS VG++S+GVM+PE +M+S+ PVV AGV+G+YGLI+ +++   IN     Y L   +                 M+IGI GD GVR  AQQPKLFV M            YG IV +I+++    S
Sbjct:   41 KSSVGISSVGVMKPEFIMRSLFPVVFAGVIGLYGLIVCIVLF--INVNKSEYSLNRAFLDLGAGLTCGLCGLASGMSIGISGDCGVRGAAQQPKLFVSMLICLIFSEALALYGFIVALIMAATGDNS 165          
The following BLAST results are available for this feature:
BLAST of DY258283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_ENTHI9.374e-2040.94V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_NEUCR2.088e-1937.30V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL2_SCHPO2.727e-1938.52V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_ENTDI4.652e-1940.16V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1AA04FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258283 ID=DY258283; Name=DY258283; organism=Citrus clementina; type=EST; length=680bp
AAGAGTGGTGTTGGTGTGGCGTCAATGGGTGTTATGAGGCCTGAGCTGGT
GATGAAGTCGATTGTGCCAGTTGTTATGGCTGGTGTTTTGGGTATATATG
GTTTGATTATTGCTGTTATTATCAGTACTGGGATTAACCCCAAGGCCAAG
TCATATTACCTTTTTGATGGCTATGCTCATCTCTCCTCCGGTTTGGCTTG
TGGTCTTGCCGGGCTTTCTGCTGGAATGGCTATTGGAATCGTTGGTGACG
CTGGTGTCAGAGCCAATGCACAGCAGCCAAAACTCTTTGTTGGGATGATC
CTTATCCTCATTTTCGCTGAAGCCCTTGCACTGTATGGCCTTATTGTTGG
TATCATCTTGTCTTCACGTGCTGGTCAGTCCAGAGCAGATTAAGAAGGGA
ATTTGTATTGCTAAGTATTCTTTTATAACTTGTCACTCTGGGGGAGCGAG
ATTTTTTTTAAATTATTCTCAGGTTCAAGTGGATAGCACTTGCTCAAAAT
TTCTTGTGGAAGTTGCCGTTCTGCGAGTCATTTGTATGTTACTCCATGTT
TCTGGTAGTAGGATTGAGTTTCTTCAAACAATAAAGTTTGCAAAGCTGTC
CATGCACTTTTGCAGAACTTTAACTGTCAGAAAGGAATTTTATTCGGTAA
TCTAGTGCATGTATTATCCTATTATCTATT
back to top