DY259729

Overview
NameDY259729
Unique NameDY259729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14233 contig Ccv1_Contig14233:26..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259729 vs. ExPASy Swiss-Prot
Match: RL33B_SCHPO (60S ribosomal protein L33-B OS=Schizosaccharomyces pombe GN=rpl33b PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.867e-25
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   84 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 389
            RLYV+   L ++RSK   +P TS++++EG ++KEE  +Y GKR+ Y+YK+     GS  R IWG +AR HGNSG VRA+F  NLP K+ G  +RV +YPSNI
Sbjct:    7 RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108          
BLAST of DY259729 vs. ExPASy Swiss-Prot
Match: RL35A_CAEEL (60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 6.387e-25
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 3
Query:   84 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKA--KTKKNG----SHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 389
            RLYV+    G+KR    Q  +TSL+++EGV  KE+  +Y GKR+ Y+YKA  KT K G    +  R IWGK+ R HGN+G VRAKF  N+PP ++G R+RV +YPSNI
Sbjct:   17 RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124          
BLAST of DY259729 vs. ExPASy Swiss-Prot
Match: RL35A_RAT (60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.090e-24
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 3
Query:   84 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 389
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of DY259729 vs. ExPASy Swiss-Prot
Match: RL35A_MOUSE (60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.090e-24
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 3
Query:   84 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 389
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of DY259729 vs. ExPASy Swiss-Prot
Match: RL35A_PONAB (60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.423e-24
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 3
Query:   84 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 389
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of DY259729 vs. ExPASy Swiss-Prot
Match: RL35A_MACFA (60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.423e-24
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 3
Query:   84 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 389
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of DY259729 vs. ExPASy Swiss-Prot
Match: RL35A_HUMAN (60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.423e-24
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 3
Query:   84 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 389
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of DY259729 vs. ExPASy Swiss-Prot
Match: RL35A_BOVIN (60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.858e-24
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 3
Query:   84 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 389
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGK+ R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
The following BLAST results are available for this feature:
BLAST of DY259729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL33B_SCHPO2.867e-2550.9860S ribosomal protein L33-B OS=Schizosaccharomyces... [more]
RL35A_CAEEL6.387e-2550.9360S ribosomal protein L35a OS=Caenorhabditis elega... [more]
RL35A_RAT1.090e-2450.4760S ribosomal protein L35a OS=Rattus norvegicus GN... [more]
RL35A_MOUSE1.090e-2450.4760S ribosomal protein L35a OS=Mus musculus GN=Rpl3... [more]
RL35A_PONAB1.423e-2450.4760S ribosomal protein L35a OS=Pongo abelii GN=RPL3... [more]
RL35A_MACFA1.423e-2450.4760S ribosomal protein L35a OS=Macaca fascicularis ... [more]
RL35A_HUMAN1.423e-2450.4760S ribosomal protein L35a OS=Homo sapiens GN=RPL3... [more]
RL35A_BOVIN1.858e-2449.5360S ribosomal protein L35a OS=Bos taurus GN=RPL35A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YA07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259729 ID=DY259729; Name=DY259729; organism=Citrus clementina; type=EST; length=629bp
CTTCTTTGCAGACTCAGGCGGCAAGCAGGTGGGCAGAGCTTCAATCATAA
ACAATGGTGAAGGGCAGGCAAGGCGAGCGCGTCAGACTCTATGTTCGAGG
AACAATTCTGGGATACAAAAGGTCAAAATCAAACCAGTATCCAAACACAT
CACTGATTCAGGTCGAGGGAGTTAACACAAAGGAAGAGGTGGCGTGGTAC
TGCGGCAAGCGTTTGGCTTACATTTACAAGGCCAAGACTAAGAAGAACGG
ATCCCACTACCGTTGTATTTGGGGAAAAGTTGCCAGATCTCACGGTAACA
GCGGCGTCGTTCGCGCCAAGTTCAAGTCCAATCTCCCTCCCAAATCCATG
GGAGATAGAGTTAGGGTTTTCATGTATCCCAGCAACATATGAGCAGCATG
GTTCGAGAAGCTACTCGATCAACAAGTGAAATGTGCCTTCTGAATTTGGG
ATTTATTCGCTTAACATTTATGTTGCAAGATTTTGGAGTTGGGAGTTATA
CTGGCTAGATGTTTTGGCTTTTGCTACTGTTAGTGTGGATTTTGGAACAT
TAATTTTAATGTTAATGCTTAGTTTTTTGTTTTGAATTTTTTCTATCATG
ATAATGAATTTACTTTATCATTTACCCTT
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