DY259734

Overview
NameDY259734
Unique NameDY259734
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1086
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:45..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 6.305e-42
Identity = 85/180 (47.22%), Postives = 120/180 (66.67%), Query Frame = 2 
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            GTTII + +NGGVVLG+DSR S G  V NR  +K++ L D +Y   SGSAAD+QT+++ V Y L  H++++ +   V+ AA LV+ +SY  K  L   +IV GWD+ +GG+++   LGG +  QPFAI      Y+YGF D  ++ GMTKEE ++ VV  ++LA+ RDG+SGGV   VTI
Sbjct:   18 GTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFAT-LGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSSGGVAYIVTI 196
[Close]
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.234e-42
Identity = 86/180 (47.78%), Postives = 121/180 (67.22%), Query Frame = 2 
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            GTTII + ++GGVVLG+DSR S G  V NR  +K++ L D +Y   SGSAAD+QT+++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   +IV GWDK  GG++Y V L G +  QPFA+      Y+YGF D  +++ M+KE+ +Q VV  +SLA++RDG+SGGV   VTI
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVTI 196
[Close]
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.234e-42
Identity = 86/180 (47.78%), Postives = 121/180 (67.22%), Query Frame = 2 
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            GTTII + ++GGVVLG+DSR S G  V NR  +K++ L D +Y   SGSAAD+QT+++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   +IV GWDK  GG++Y V L G +  QPFA+      Y+YGF D  +++ M+KE+ +Q VV  +SLA++RDG+SGGV   VTI
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVTI 196
[Close]
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 1.075e-41
Identity = 85/180 (47.22%), Postives = 119/180 (66.11%), Query Frame = 2 
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L + +Y   SGSAAD+Q V+D   Y L  H I+L +P  V  AAN+VR +SY  +  L   ++V GWD+ EGG++YG  LGG +  QPFAI      ++YG+ D A+K GM+ EE  +    A++LA++RDG+SGGV+  VTI
Sbjct:   20 GTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTI 198
[Close]
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.087e-41
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 2 
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++LA+ RDG+SGGV+  VTI
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTI 198
[Close]
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.087e-41
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 2 
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++LA+ RDG+SGGV+  VTI
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTI 198
[Close]
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.087e-41
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 2 
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++LA+ RDG+SGGV+  VTI
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTI 198
[Close]
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.087e-41
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 2 
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++LA+ RDG+SGGV+  VTI
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTI 198
[Close]
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 5.337e-41
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 2 
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++LA+ RDG+SGGV+  VTI
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEECRRFTTNAITLAMNRDGSSGGVIYLVTI 198
[Close]
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.460e-40
Identity = 81/180 (45.00%), Postives = 117/180 (65.00%), Query Frame = 2 
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L  ++Y   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+VR ++Y  +  L   ++V GWD+ EGG++YG  + G +I QPFAI      Y+YG+ D A+K GM+ EE  +    A++LA+ RDG+SGGV+   TI
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGT-MSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMKRDGSSGGVIYLATI 198
The following BLAST results are available for this feature:
BLAST of DY259734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PSB9_ORYLA6.305e-4247.22Proteasome subunit beta type-9 OS=Oryzias latipes ... [more]
PSB9_SALSA8.234e-4247.78Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB9_ONCMY8.234e-4247.78Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSB9_HUMAN1.075e-4147.22Proteasome subunit beta type-9 OS=Homo sapiens GN=... [more]
PSB9_MUSSI4.087e-4146.11Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSMB4.087e-4146.11Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSB9_MUSDU4.087e-4146.11Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB9_MOUSE4.087e-4146.11Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PSB9_MUSPL5.337e-4146.11Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSB9_BOVIN3.460e-4045.00Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YA12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259734 ID=DY259734; Name=DY259734; organism=Citrus clementina; type=EST; length=1086bp
AACTTAAAATTAATTTTGTTAAGGGCATTTAGAAATTGTGGTAAGTGAGT
GTTTTAGAGGAAAGATGGATCTGAAGATGGAAGATTTTAACGCGCCACAC
TCGATGGGTACTACTATCATCGGCGTCACTTACAACGGCGGCGTTGTCCT
CGGCGCCGATTCTCGTACTAGCACCGGGGTGTATGTTGCTAACCGAGCTT
CAGACAAGATTACGCAGCTCACTGATAATGTCTACCTTTGCCGCTCGGGA
TCGGCTGCAGATTCTCAGACTGTCTCCGACTATGTTCGCTACTTCCTTCA
TCAACACACGATACAGCTAGGGCAGCCTGCAACTGTTAAAGTTGCTGCCA
ATCTTGTCAGGCTGCTATCCTACAATAACAAGAACTTTTTGCAAACTGGA
ATGATTGTTGGCGGTTGGGATAAGTATGAAGGTGGTAAAATTTATGGAGT
TCCTCTTGGAGGAACAATAATTGAGCAGCCTTTTGCAATTGGAGGATCTG
GCTCAAGTTACCTGTATGGGTTTTTTGATCAGGCATGGAAAGAGGGAATG
ACCAAGGAAGAAGCTGAGCAATTAGTGGTTAAAGCAGTTTCTCTTGCCAT
TGCGCGTGATGGTGCTAGTGGAGGTGTTGTTCGAACCGTCACAATTATTC
TGAAGGAGTGAGCAGAAAGTTCCACCCCGGCCACCCCCTTCCCTTGTGGC
ATGAGGAGTTGGAGCCCCAAAATTCCTTTGCTGGACCTGATGAATGTAGC
CCGTCCCTGAGCCGATGAACCATGTGAAGAAAGAGGATTTCCCCCTTGTC
CTACTACCTTTTCCCCCCAGGGGGGTATTCCCTCTTTATCCTGGAAAAAG
CCCCGGAGGTTCCCCCCCGCCGGGAATTTCCCCCGGTTTTTTTTTTTTTT
TCAAAAAAAAAAAAATTTTACTCCCCCGGGAAAACCCTCCCAATCATAAC
GGGGGGTTTGGAGGGATGAATTTTTTATTTGGTGGAAGCCCTTTTCTCCC
CCAAAACAAACAACAAAAAAACAAACCCACCTCCTTCTCTGTCTCCAACT
TCGCGCACTAACACGAAAAACCCTCTCCCTTCACTC
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