DY259734

Overview
NameDY259734
Unique NameDY259734
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1086
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:45..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.879e-40
Identity = 80/183 (43.72%), Postives = 118/183 (64.48%), Query Frame = 2
Query:  101 SMGTTIIGVTYNGGVVLGADSRTSTG-VYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            S GTTI+ VT+NGGV++G+DSR S G  YV+++  +K+ Q+ D ++ C +GS AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  LQ G I  GWD+ +G ++Y V LGG ++ QPF I      Y+YG+ D  +K  M+KEE  Q    A++LA+ RD  SGGV   V I
Sbjct:   14 STGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVI 196          

HSP 2 Score: 21.9422 bits (45), Expect = 3.879e-40
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = 1
Query:  652 EGVSRKFHPGHPLPLWHEE 708
            EGV     PG  LP +H+E
Sbjct:  199 EGVEHVVIPGDKLPKFHDE 217          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.586e-40
Identity = 80/183 (43.72%), Postives = 118/183 (64.48%), Query Frame = 2
Query:  101 SMGTTIIGVTYNGGVVLGADSRTSTG-VYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            S GTTI+ VT+NGGV++G+DSR S G  YV+++  +K+ Q+ D ++ C +GS AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  LQ G I  GWD+ +G ++Y V LGG ++ QPF I      Y+YG+ D  +K  M+KEE  Q    A++LA+ RD  SGGV   V I
Sbjct:   14 STGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVI 196          

HSP 2 Score: 21.9422 bits (45), Expect = 6.586e-40
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = 1
Query:  652 EGVSRKFHPGHPLPLWHEE 708
            EGV     PG  LP +H+E
Sbjct:  199 EGVEHVVIPGDKLPKFHDE 217          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB6_ENCCU (Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi GN=PRE3 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 8.818e-36
Identity = 78/186 (41.94%), Postives = 118/186 (63.44%), Query Frame = 2
Query:   89 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            N     GTTII + Y+ GV++GADSRTS G YV++R +DK+TQ+TD +++CRSGS+AD+Q +S Y+R +L  ++        V+ AA L   + Y N + L  G+IV G+D  +  +++ + LGG++ E+ +AI      ++YG+ D  W+ GM+ EE  + V  AVS AI RD ASGG +R   I
Sbjct:    4 NEKEMTGTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYLRMYLSMYSQLEDSIPQVQRAAALASKIIYENPSLL-AGLIVAGYD--DKPRVFNISLGGSLTERDWAIGGSGSAFIYGYCDVNWRSGMSLEEGIRFVRNAVSCAINRDNASGGCIRMSAI 186          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.460e-22
Identity = 65/196 (33.16%), Postives = 104/196 (53.06%), Query Frame = 2
Query:   62 KMDLKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTII 649
            K  L+M+ F      GTTI+GV Y GGVVLGAD+R + G  VA++  +KI  + DN+Y C +G+AAD+++ +  +   L  H +  G+   V  A  +++ + +  +  +   +I+GG D   G  ++ +   G+  + P+             F+  +K  MTKEEA  LV +A+S  I  D  SG  V  VT+I
Sbjct:   22 KTGLRMKGFM---KTGTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADNIYCCGAGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGID-INGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSNV-DVTVI 212          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB7B_ARATH (Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 8.013e-21
Identity = 62/196 (31.63%), Postives = 103/196 (52.55%), Query Frame = 2
Query:   50 CFRGKMDLKMEDFNAPHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            C R  M L  +   AP  +  GTTI+G+ +  GV+LGAD+R + G  VA++  +KI  +  N+Y C +G+AAD++ V+D V   L  H  Q G+ + V  A  L++   ++ +  +   +++GG D   G  ++ +   G+    PFA            F+  +KEG+T++E  +LV +A+   I  D  SG  V
Sbjct:   19 CKRNDM-LTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNV 212          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 2.331e-20
Identity = 61/196 (31.12%), Postives = 103/196 (52.55%), Query Frame = 2
Query:   50 CFRGKMDLKMEDFNAPHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            C R  M L  +   AP  +  GTTI+G+ +  GV+LGAD+R + G  VA++  +KI  +  N+Y C +G+AAD++ V+D V   L  H  Q G+ + V  A  L++   ++ +  +   +++GG D   G  ++ +   G+    PFA            F+  +KEG+T++E  +LV +++   I  D  SG  V
Sbjct:   19 CKRNDM-LTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNV 212          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB7_PIG (Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 7.500e-19
Identity = 51/172 (29.65%), Postives = 92/172 (53.49%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASG 622
            GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA+QLV +A++  I  D  SG
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSG 213          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB7_RAT (Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.279e-18
Identity = 53/187 (28.34%), Postives = 97/187 (51.87%), Query Frame = 2
Query:   68 DLKMEDFNAPHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASG 622
            D   + F  P +   GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA++LV +A++  I  D  SG
Sbjct:   28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSG 213          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB7_MOUSE (Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.279e-18
Identity = 53/187 (28.34%), Postives = 97/187 (51.87%), Query Frame = 2
Query:   68 DLKMEDFNAPHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASG 622
            D   + F  P +   GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA++LV +A++  I  D  SG
Sbjct:   28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSG 213          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB7_BOVIN (Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.671e-18
Identity = 50/172 (29.07%), Postives = 92/172 (53.49%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASG 622
            GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA++LV +A++  I  D  SG
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSG 213          
The following BLAST results are available for this feature:
BLAST of DY259734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PB6LB_SALSA3.879e-4043.72Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA6.586e-4043.72Proteasome subunit beta type-6-A like protein OS=S... [more]
PSB6_ENCCU8.818e-3641.94Probable proteasome subunit beta type-6 OS=Encepha... [more]
PSB7_DICDI1.460e-2233.16Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB7B_ARATH8.013e-2131.63Proteasome subunit beta type-7-B OS=Arabidopsis th... [more]
PSB7A_ARATH2.331e-2031.12Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB7_PIG7.500e-1929.65Proteasome subunit beta type-7 OS=Sus scrofa GN=PS... [more]
PSB7_RAT1.279e-1828.34Proteasome subunit beta type-7 OS=Rattus norvegicu... [more]
PSB7_MOUSE1.279e-1828.34Proteasome subunit beta type-7 OS=Mus musculus GN=... [more]
PSB7_BOVIN1.671e-1829.07Proteasome subunit beta type-7 OS=Bos taurus GN=PS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YA12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259734 ID=DY259734; Name=DY259734; organism=Citrus clementina; type=EST; length=1086bp
AACTTAAAATTAATTTTGTTAAGGGCATTTAGAAATTGTGGTAAGTGAGT
GTTTTAGAGGAAAGATGGATCTGAAGATGGAAGATTTTAACGCGCCACAC
TCGATGGGTACTACTATCATCGGCGTCACTTACAACGGCGGCGTTGTCCT
CGGCGCCGATTCTCGTACTAGCACCGGGGTGTATGTTGCTAACCGAGCTT
CAGACAAGATTACGCAGCTCACTGATAATGTCTACCTTTGCCGCTCGGGA
TCGGCTGCAGATTCTCAGACTGTCTCCGACTATGTTCGCTACTTCCTTCA
TCAACACACGATACAGCTAGGGCAGCCTGCAACTGTTAAAGTTGCTGCCA
ATCTTGTCAGGCTGCTATCCTACAATAACAAGAACTTTTTGCAAACTGGA
ATGATTGTTGGCGGTTGGGATAAGTATGAAGGTGGTAAAATTTATGGAGT
TCCTCTTGGAGGAACAATAATTGAGCAGCCTTTTGCAATTGGAGGATCTG
GCTCAAGTTACCTGTATGGGTTTTTTGATCAGGCATGGAAAGAGGGAATG
ACCAAGGAAGAAGCTGAGCAATTAGTGGTTAAAGCAGTTTCTCTTGCCAT
TGCGCGTGATGGTGCTAGTGGAGGTGTTGTTCGAACCGTCACAATTATTC
TGAAGGAGTGAGCAGAAAGTTCCACCCCGGCCACCCCCTTCCCTTGTGGC
ATGAGGAGTTGGAGCCCCAAAATTCCTTTGCTGGACCTGATGAATGTAGC
CCGTCCCTGAGCCGATGAACCATGTGAAGAAAGAGGATTTCCCCCTTGTC
CTACTACCTTTTCCCCCCAGGGGGGTATTCCCTCTTTATCCTGGAAAAAG
CCCCGGAGGTTCCCCCCCGCCGGGAATTTCCCCCGGTTTTTTTTTTTTTT
TCAAAAAAAAAAAAATTTTACTCCCCCGGGAAAACCCTCCCAATCATAAC
GGGGGGTTTGGAGGGATGAATTTTTTATTTGGTGGAAGCCCTTTTCTCCC
CCAAAACAAACAACAAAAAAACAAACCCACCTCCTTCTCTGTCTCCAACT
TCGCGCACTAACACGAAAAACCCTCTCCCTTCACTC
back to top