DY259734

Overview
NameDY259734
Unique NameDY259734
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1086
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:45..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.729e-15
Identity = 56/192 (29.17%), Postives = 96/192 (50.00%), Query Frame = 2
Query:   89 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLV-RLLSYNNKNFLQTGMIVGGWDKYEGGKIYGV-PLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIILKE 658
            N  +  GTT +GV    G+VL ++ R + G ++A++ + K+ Q+ D V +  +GS  D+Q +   V      + ++  +  T+K    L+   LS N    +   +++GG DK  G  IY +  +GG+I E   +         YG  +  ++E MT +E   L ++A+  A  RD ASG  +  V +I KE
Sbjct:    3 NDKYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDK-NGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENI-DVVVITKE 192          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.030e-15
Identity = 49/187 (26.20%), Postives = 99/187 (52.94%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF---LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIILKE 658
            GTT +G+T   GVV   + R S G  +A++A+DKI ++ +++    +GS AD+Q++  Y++     + ++  +  +++ AA L   + ++++ +   +QT  ++GG D+  G KIY +   G +I   F          YG  +  + + +  +EA  + ++A+  A+ RD  SG  +   T+  +E
Sbjct:    9 GTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQT--LLGGVDE-NGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEEE 192          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB5_DICDI (Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.570e-15
Identity = 56/180 (31.11%), Postives = 89/180 (49.44%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAAD----SQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            GTT +   Y GG+++  DS+++ G YVA+R+  K+ ++T  +    +G AAD     + +    R +  ++   +   A  K+ AN+V    Y+ K + L  G ++ GWDK  G ++Y V   GT +            Y YG  D  +K  M  EEA +L  +AV  A  RD  SGG +
Sbjct:   62 GTTTLAFVYGGGIIVSVDSKSTQGPYVASRSVKKVIEITPTLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIV----YSYKGYGLSMGTMITGWDK-TGPQLYYVDNDGTRLHGQRFSCGSGSTYAYGVLDTGFKWDMNDEEAYELGRRAVYHATHRDAYSGGAI 236          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.121e-14
Identity = 53/175 (30.29%), Postives = 87/175 (49.71%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGV 628
            GTT +   +  GV++ ADSR S G Y+++++  KI ++   +    +G AAD Q     +      H +   +  +V  A+ L+  + Y+ +   L  G ++ GWD+   G  Y    GG +    F++      Y YG  D  +K  M+ EEA +L  +++  A  RDGASGGV
Sbjct:   57 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSV-GSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGV 230          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.912e-14
Identity = 48/176 (27.27%), Postives = 87/176 (49.43%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            GTT +   +  GV++  DSR + G Y+++   +K+ ++  ++    SG AAD Q     +      + ++ G+  +V  A+ L+  + Y  +   L  G ++ GWDK +G  +Y V   GT +            Y YG  D  ++  ++ EEA +L  +A++ A  RD  SGG++
Sbjct:   72 GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDK-KGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDSYSGGII 246          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB8_RAT (Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 3.261e-14
Identity = 53/177 (29.94%), Postives = 84/177 (47.46%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLV--RLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            GTT +   +  GV++  DSR S G Y+A    +K+ ++   +    SG AAD Q     +      + ++ G+  +V  A+ L+   +L Y     L  G ++ GWDK +G  +Y V   GT +            Y YG  D  +++ ++ EEA  L  +A+  A  RD  SGGVV
Sbjct:   72 GTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMG-LSMGSMICGWDK-KGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLARRAIVYATHRDSYSGGVV 246          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.258e-14
Identity = 50/186 (26.88%), Postives = 95/186 (51.08%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGV-PLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIILKE 658
            GTT +G+  +  V+L  D R S G  VA++ + K+ ++ D + +  +GS  D+Q +   +      + ++ G+       A L+  + ++++ F   T +I+GG+D  EG K++ + PLGG   E+ F          YG  +  +   M+ EE  +L + A+  A+ RD  SG  + ++ +I K+
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGI-SLAVITKD 190          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB8_MOUSE (Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 7.264e-14
Identity = 51/177 (28.81%), Postives = 86/177 (48.59%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVR--LLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            GTT +   +  GV++  DSR + G Y+++   +K+ ++   +    SG AAD Q     +      + ++ G+  +V  A+ L+   +L Y     L  G ++ GWDK +G  +Y V   GT +            Y YG  D  +++ ++ EEA  L  +A++ A  RD  SGGVV
Sbjct:   72 GTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMG-LSMGSMICGWDK-KGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVV 246          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.487e-14
Identity = 51/181 (28.18%), Postives = 92/181 (50.83%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTG-MIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            GTT +G+    GVVL AD+R S G  +  +   KI ++ +++ +  +G   D   +   ++   + +   +G+  +VK  A L+  +   +K F   G  +VGG+D  E  +++ V + G I E  +A       + Y   D  ++E M+  +  +L VKA+++AI RD  +G  +  VTI
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYD--EKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTGDGLLVVTI 188          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.113e-13
Identity = 48/189 (25.40%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  101 SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIILKE*AE 667
            S GTTI+GV +N GVV+ AD+R++ G  VA++   K+ +++  ++   +G+AAD++ V+  +   +  H++   +   V  A  +++   +  +  +   +IV G D   G  ++ +   G+     +              +  WK+ +TKEEA +L   A+   I  D  SG  V    + + + AE
Sbjct:   27 STGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAE 214          
The following BLAST results are available for this feature:
BLAST of DY259734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PSMB_METTE1.729e-1529.17Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSMB_METTH5.030e-1526.20Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSB5_DICDI6.570e-1531.11Proteasome subunit beta type-5 OS=Dictyostelium di... [more]
PSB5B_ARATH1.121e-1430.29Proteasome subunit beta type-5-B OS=Arabidopsis th... [more]
PSB8_CANFA1.912e-1427.27Proteasome subunit beta type-8 OS=Canis familiaris... [more]
PSB8_RAT3.261e-1429.94Proteasome subunit beta type-8 OS=Rattus norvegicu... [more]
PSMB_METJA4.258e-1426.88Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSB8_MOUSE7.264e-1428.81Proteasome subunit beta type-8 OS=Mus musculus GN=... [more]
PSMB_PYRFU9.487e-1428.18Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSB7_YEAST2.113e-1325.40Proteasome component PUP1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YA12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259734 ID=DY259734; Name=DY259734; organism=Citrus clementina; type=EST; length=1086bp
AACTTAAAATTAATTTTGTTAAGGGCATTTAGAAATTGTGGTAAGTGAGT
GTTTTAGAGGAAAGATGGATCTGAAGATGGAAGATTTTAACGCGCCACAC
TCGATGGGTACTACTATCATCGGCGTCACTTACAACGGCGGCGTTGTCCT
CGGCGCCGATTCTCGTACTAGCACCGGGGTGTATGTTGCTAACCGAGCTT
CAGACAAGATTACGCAGCTCACTGATAATGTCTACCTTTGCCGCTCGGGA
TCGGCTGCAGATTCTCAGACTGTCTCCGACTATGTTCGCTACTTCCTTCA
TCAACACACGATACAGCTAGGGCAGCCTGCAACTGTTAAAGTTGCTGCCA
ATCTTGTCAGGCTGCTATCCTACAATAACAAGAACTTTTTGCAAACTGGA
ATGATTGTTGGCGGTTGGGATAAGTATGAAGGTGGTAAAATTTATGGAGT
TCCTCTTGGAGGAACAATAATTGAGCAGCCTTTTGCAATTGGAGGATCTG
GCTCAAGTTACCTGTATGGGTTTTTTGATCAGGCATGGAAAGAGGGAATG
ACCAAGGAAGAAGCTGAGCAATTAGTGGTTAAAGCAGTTTCTCTTGCCAT
TGCGCGTGATGGTGCTAGTGGAGGTGTTGTTCGAACCGTCACAATTATTC
TGAAGGAGTGAGCAGAAAGTTCCACCCCGGCCACCCCCTTCCCTTGTGGC
ATGAGGAGTTGGAGCCCCAAAATTCCTTTGCTGGACCTGATGAATGTAGC
CCGTCCCTGAGCCGATGAACCATGTGAAGAAAGAGGATTTCCCCCTTGTC
CTACTACCTTTTCCCCCCAGGGGGGTATTCCCTCTTTATCCTGGAAAAAG
CCCCGGAGGTTCCCCCCCGCCGGGAATTTCCCCCGGTTTTTTTTTTTTTT
TCAAAAAAAAAAAAATTTTACTCCCCCGGGAAAACCCTCCCAATCATAAC
GGGGGGTTTGGAGGGATGAATTTTTTATTTGGTGGAAGCCCTTTTCTCCC
CCAAAACAAACAACAAAAAAACAAACCCACCTCCTTCTCTGTCTCCAACT
TCGCGCACTAACACGAAAAACCCTCTCCCTTCACTC
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