DY259734

Overview
NameDY259734
Unique NameDY259734
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1086
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:45..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB5_CHICK (Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.708e-13
Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            GTT +   +  GVV+  DSR + G Y+A++   K+ ++  ++    +G AAD       +      + ++  +P +V  A+ L+  + Y  K   L  G ++ GWDK   G  Y    G  I  + FA+      Y YG  D   +  M  +EA +L  +A+  A  RD  SGG V
Sbjct:   55 GTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGTRIPGEAFAV-GSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSV 229          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB8_HUMAN (Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.049e-12
Identity = 50/176 (28.41%), Postives = 82/176 (46.59%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            GTT +   +  GV+   DSR S G Y++    +K+ ++   +    SG AAD Q     +      + ++ G+  +V  A+ L+  +    +   L  G ++ GWDK +G  +Y V   GT +            Y YG  D  ++  ++ EEA  L  +A++ A  RD  SGGVV
Sbjct:   72 GTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDK-KGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVV 246          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB5_YEAST (Proteasome component PRE2 OS=Saccharomyces cerevisiae GN=PRE2 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 2.337e-12
Identity = 49/189 (25.93%), Postives = 88/189 (46.56%), Query Frame = 2
Query:   68 DLKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            D +  D     + GTT +   + GG+++  DSR + G +VA++   K+ ++   +    +G AAD Q    ++      H ++  +  +V  A+ ++  L Y  K   L  G ++ G+ + EG  IY V   GT ++           + YG  D  +K  ++ E+A  L  +++  A  RD  SGG V
Sbjct:   62 DSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSV 250          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.052e-12
Identity = 44/185 (23.78%), Postives = 87/185 (47.03%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLV-RLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIILKE 658
            GTT +G+T    V++  + R +   ++ ++   K+ Q+     +  +G   D+Q +  Y++  L  + +Q      ++  A L+  +L+          ++VGG D      ++ +   G  +E  +A       ++YG  +  + E MT +E   LV++A+S A  RD ASGG++    I  K+
Sbjct:    8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDT--APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKD 190          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.052e-12
Identity = 46/202 (22.77%), Postives = 98/202 (48.51%), Query Frame = 2
Query:   47 ECFRGKMDLKMEDFNAPH--SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            E ++  + L+ + F  P   S GTTI+GV     +VLGAD+R + G  +A++   K+  ++ N++   +G+AAD++ V+  +   +  H++   +   V  A  +++   +  +  +   +++GG+D  +G  ++ +   G+  + P+              +  ++  + + EA +LV +A+   I  D  SG     V I
Sbjct:   13 EYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLVVI 213          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.986e-12
Identity = 53/187 (28.34%), Postives = 87/187 (46.52%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLV-------RLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 646
            GTT +G+  + GVVL AD R S G  V  +   KI ++ +++ +  +G   D   +   +R     +  Q G+  +VK  A L+       R+L Y          +VGG+D  E  ++Y V + G I E  +        + Y   D  ++E +   E  ++ V+A++ AI RD  SG  +  VTI
Sbjct:   10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPY------LAWFLVGGFD--EKPRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB5_BOVIN (Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.206e-12
Identity = 49/176 (27.84%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            GTT +   +  GV++ ADSR + G Y+A++   K+ ++   +    +G AAD       +      + ++  +  +V  A+ L+  + Y  K   L  G ++ GWDK   G  Y    G  I    F++      Y YG  D+ +   +  EEA  L  +A+  A  RD  SGG V
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSV-GSGSVYAYGVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGSV 233          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB5_PONAB (Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 6.799e-12
Identity = 48/176 (27.27%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            GTT +   +  GV++ ADSR + G Y+A++   K+ ++   +    +G AAD       +      + ++  +  +V  A+ L+  + Y  K   L  G ++ GWDK   G  Y    G  I    F++      Y YG  D+ +   +  E+A  L  +A+  A  RD  SGG V
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSV-GSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 233          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB5_MOUSE (Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 6.799e-12
Identity = 49/176 (27.84%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            GTT +   +  GV++ ADSR + G Y+A++   K+ ++   +    +G AAD       +      + ++  +  +V  A+ L+  + Y  K   L  G ++ GWDK   G  Y    G  I    F++      Y YG  D+ +   +  EEA  L  +A+  A  RD  SGG V
Sbjct:   59 GTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSV-GSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAV 233          
BLAST of DY259734 vs. ExPASy Swiss-Prot
Match: PSB5_HUMAN (Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 6.799e-12
Identity = 48/176 (27.27%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  107 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 631
            GTT +   +  GV++ ADSR + G Y+A++   K+ ++   +    +G AAD       +      + ++  +  +V  A+ L+  + Y  K   L  G ++ GWDK   G  Y    G  I    F++      Y YG  D+ +   +  E+A  L  +A+  A  RD  SGG V
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSV-GSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 233          
The following BLAST results are available for this feature:
BLAST of DY259734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PSB5_CHICK4.708e-1328.98Proteasome subunit beta type-5 (Fragment) OS=Gallu... [more]
PSB8_HUMAN1.049e-1228.41Proteasome subunit beta type-8 OS=Homo sapiens GN=... [more]
PSB5_YEAST2.337e-1225.93Proteasome component PRE2 OS=Saccharomyces cerevis... [more]
PSMB_THEAC3.052e-1223.78Proteasome subunit beta OS=Thermoplasma acidophilu... [more]
PSB7_SCHPO3.052e-1222.77Probable proteasome subunit beta type-7 OS=Schizos... [more]
PSMB_PYRAB3.986e-1228.34Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSB5_BOVIN5.206e-1227.84Proteasome subunit beta type-5 OS=Bos taurus GN=PS... [more]
PSB5_PONAB6.799e-1227.27Proteasome subunit beta type-5 OS=Pongo abelii GN=... [more]
PSB5_MOUSE6.799e-1227.84Proteasome subunit beta type-5 OS=Mus musculus GN=... [more]
PSB5_HUMAN6.799e-1227.27Proteasome subunit beta type-5 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YA12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259734 ID=DY259734; Name=DY259734; organism=Citrus clementina; type=EST; length=1086bp
AACTTAAAATTAATTTTGTTAAGGGCATTTAGAAATTGTGGTAAGTGAGT
GTTTTAGAGGAAAGATGGATCTGAAGATGGAAGATTTTAACGCGCCACAC
TCGATGGGTACTACTATCATCGGCGTCACTTACAACGGCGGCGTTGTCCT
CGGCGCCGATTCTCGTACTAGCACCGGGGTGTATGTTGCTAACCGAGCTT
CAGACAAGATTACGCAGCTCACTGATAATGTCTACCTTTGCCGCTCGGGA
TCGGCTGCAGATTCTCAGACTGTCTCCGACTATGTTCGCTACTTCCTTCA
TCAACACACGATACAGCTAGGGCAGCCTGCAACTGTTAAAGTTGCTGCCA
ATCTTGTCAGGCTGCTATCCTACAATAACAAGAACTTTTTGCAAACTGGA
ATGATTGTTGGCGGTTGGGATAAGTATGAAGGTGGTAAAATTTATGGAGT
TCCTCTTGGAGGAACAATAATTGAGCAGCCTTTTGCAATTGGAGGATCTG
GCTCAAGTTACCTGTATGGGTTTTTTGATCAGGCATGGAAAGAGGGAATG
ACCAAGGAAGAAGCTGAGCAATTAGTGGTTAAAGCAGTTTCTCTTGCCAT
TGCGCGTGATGGTGCTAGTGGAGGTGTTGTTCGAACCGTCACAATTATTC
TGAAGGAGTGAGCAGAAAGTTCCACCCCGGCCACCCCCTTCCCTTGTGGC
ATGAGGAGTTGGAGCCCCAAAATTCCTTTGCTGGACCTGATGAATGTAGC
CCGTCCCTGAGCCGATGAACCATGTGAAGAAAGAGGATTTCCCCCTTGTC
CTACTACCTTTTCCCCCCAGGGGGGTATTCCCTCTTTATCCTGGAAAAAG
CCCCGGAGGTTCCCCCCCGCCGGGAATTTCCCCCGGTTTTTTTTTTTTTT
TCAAAAAAAAAAAAATTTTACTCCCCCGGGAAAACCCTCCCAATCATAAC
GGGGGGTTTGGAGGGATGAATTTTTTATTTGGTGGAAGCCCTTTTCTCCC
CCAAAACAAACAACAAAAAAACAAACCCACCTCCTTCTCTGTCTCCAACT
TCGCGCACTAACACGAAAAACCCTCTCCCTTCACTC
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